Hhal009141.1
Basic Information
- Insect
- Halyomorpha halys
- Gene Symbol
- -
- Assembly
- GCA_000696795.2
- Location
- NW:106817-222206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2.2 88 3.4 0.2 6 23 134 153 131 153 0.87 2 16 4.2 1.7e+02 2.5 0.6 1 21 253 273 253 277 0.88 3 16 0.00012 0.0049 16.8 0.3 2 23 334 357 333 357 0.91 4 16 0.53 21 5.3 1.9 3 23 374 395 372 395 0.96 5 16 0.75 30 4.8 1.4 1 22 400 421 400 424 0.89 6 16 1.4 54 4.0 0.3 2 23 434 456 434 456 0.94 7 16 0.11 4.6 7.4 0.3 1 21 461 481 461 482 0.94 8 16 0.0041 0.16 12.0 2.5 1 23 525 546 525 546 0.95 9 16 2.3e-05 0.0009 19.1 0.2 1 23 552 575 552 575 0.96 10 16 0.003 0.12 12.4 2.0 3 23 583 603 581 604 0.94 11 16 0.00023 0.0093 15.9 0.6 1 23 610 632 610 632 0.97 12 16 8.1 3.2e+02 1.6 0.6 1 23 637 661 637 661 0.82 13 16 0.0012 0.05 13.6 4.7 1 23 667 690 667 690 0.97 14 16 0.00063 0.025 14.5 5.5 2 23 698 719 697 719 0.96 15 16 0.0026 0.1 12.6 2.6 1 21 725 745 725 750 0.93 16 16 2.9 1.2e+02 3.0 0.1 1 20 756 776 756 780 0.68
Sequence Information
- Coding Sequence
- ATGGCAGGGAGTGAGGACGAAGACGATGACACTCACTTCTGCATCAAATGCCACGCCACTATGCGAGGCCTGGACACCTACGTGGCACACAGGAGAGCCAAGTGCAGGCCTGACCGCGAGAAGAAGGCCCACGACTTCTTCTCCTCTTTGAACTTGCAGAGCAGCAGCAAGTCCTTGTGGCCTGCCAGTGCTGCCAACGACGCTGTGGAGGACCAGGTTGAAGAAAGAAGGGAGATTCCACCACCGGGTCACACCGGAGGAAAATGGAAACCGGAACAAACTGAAATATCAGAACATCAGGTTAGTACCCAAATCCCACCTCCAGACCACACTCGCGGCAAGTGGGGCCCGGCAGAGCGCCCATGGGGTCAGCTGCAGAAGGGCTACTGGTGCGGACCCTGTAATAGGAGGCTAAGCTCGAGGGTGGTCTACGAGAGGCACATAAGGTCGGAGCTCCACTTCAAGAGGACTAACCAATGGCCGGGGCAGGACCTCGGCCGCAGGAGCAGGGTGAGGACCAGGGCCATCCTGGCAACCTCCCTCAAGGCCATCAACAGGAGGTACAGAAAGGAAAAGCAGCCAAAAGAGCTGATAAGAAAGAAGGGAGGTACCATGGTATGCGAGGTATGCAAGTGCAAGGTTTGGCCTCACTTGATAGGAAAGCACTTGGTCTCTCATTACCACTACAGGCACCGCAAGGCTGGTTCAGAGGCCCTGGTCTTCCAGAACATGGACAGTGTGGTAAGGCAAGCCCCATTTCAGTGCGGCCTCTGCAAGTTCTATACCAACACCTTTGCGGATTTTATTGAACATTGGACTTCTGACATGCATCGTCAGGCAGATCTCAAGTTGGAGGGCAGATATTGGTGCTGCATTTGTAAGTGTAGTAGTGATAGCTCCGTGGCCATGGGCTTCCACATAGAGAGCGAAGGGCACAAGGAGATGGTGTCTGTCATTAATAGGTCCGTCCCGATTGTGATCCAGAAGAGGATCTTACTCCAGTGCGAAGTGTGCTCCAGGAGTTTCAGgTATAATATGGAATTGAAGGCCCATGCCAGGAGGTGGGGCCATGAACAAACTAAGAGTTCTGGATCCGACTCCTACCAGGAAGTCACCGATTGCGAAGACTGTGACTTCCGAGGTCATTCACTCCTCTCTTATCAACGACATCTGCGGATGAAGCACGGCAAGGAAATACACTTCTGTAGAAGGTGTAATGCCCGCTTCGACAGCTTAGAAGAGGCGCGAAGACACAGGAAGGAGGCGGAACATCGTGATGCTGGTCCCAAGATTGACAGGCAATGTCCTCACTGCTTCCTCATCGTCCGGGGACTGTTGGCTCTCAAGGAGCATCTCCAAAACGAGCATCCCGAACGGCGACATCGCTGCCTCCGATGTGGTGCAGACTTCATCCTCAAGCAGGAGTTGACTCAACACGTCAAAAACGGACGCTGCAGCCCTACTATCAGTGATAGAGCTCACAAGTGCATCAAATGTCACTTCTCGACTGATTCAGAGGCCGAGCTTCTTCTTCACAACATCCTCCATCGCGAGCCCGACGAGCAGCAACGCTATTTGTGTTTTTACTGCGATAAGTACTTCAAGAAAGACACTCTCCGTAATCATGTGAAAGTGCATACAACTGAAAGAAACTATATCTGCCAAATCTGTGAATTGAGCTTCAGTAGAAGCGACGCTTTGGCCAAACACACCTCCAGGGTCCACGAGATGTCTCGCTGCGTGGCCTGCAGGCTTTGTGCCGCTCAGTTTGCCACAAGTAAGCACCTCAACCGGCACATGTCAATCCACCACGAGAGGACCAAGAACTTCGCTTGTTCTGAGTGCTCCTCCAGGTTTTACAACAAggCCAGCTTGGAGAAGCACATCCAGCTCCACGAGGGAAAGAAATACTCCTGCGATCACGAAGGATGTATCTTCAAGGGTCGATCTGAAGCCGAGCTGAGGACACACAGGGCGACACATGGCTCTGAAAGGAACTACCACTGCAGGCATTGTCCGTACTCTGCCAAGACTAGGGCGCAGCTAACCAAACATATCAAGTCACAGCACACTGAAGAAGGGATGGCGCTGAGTTGCCCTCATTGCGACTTCACGACCAAGAACAGAACTCACCTCCAGAGACATACCAACCTCCACACGGGGCAGAAGCCGTTTAGGTGCCCCCACTGTCCCTTCTCCTGCACTCTATTAGAGAATCTTAGAAAGCACGTGATATCCTCAAAGTTGCACCCCGGCAAGTTCTTGTACGAATGCCCGGATTGCGACGACCTGAAGACGAACCTGTCGAAGGTGCTGAAGGCCCACCTGGTCTCAGTCCACGGGAGGAGCGCCTCGGAAGCTGCAGCCCACATCTCTGGAGTACATCGTCCCGAGGCGGATACCGAACCGCAGGGTCTAGTACCAGTCCCTTCCAACAGGagAAAGAAGAGCTTCGCCGCCCCACGGGATCAAGAAGAGGAGCAGCTTCCTACCCTGGCATCCGTGGCCTTGGCGTCCAACGAAGAGGATGTCATCTTCATTGAGGTCGATGGAGGCCTGGAGAGTGTCCTTTACCAGCAGTCTGACCACCTGGAGGCCTACCCTCCGGGCAGAGTATAA
- Protein Sequence
- MAGSEDEDDDTHFCIKCHATMRGLDTYVAHRRAKCRPDREKKAHDFFSSLNLQSSSKSLWPASAANDAVEDQVEERREIPPPGHTGGKWKPEQTEISEHQVSTQIPPPDHTRGKWGPAERPWGQLQKGYWCGPCNRRLSSRVVYERHIRSELHFKRTNQWPGQDLGRRSRVRTRAILATSLKAINRRYRKEKQPKELIRKKGGTMVCEVCKCKVWPHLIGKHLVSHYHYRHRKAGSEALVFQNMDSVVRQAPFQCGLCKFYTNTFADFIEHWTSDMHRQADLKLEGRYWCCICKCSSDSSVAMGFHIESEGHKEMVSVINRSVPIVIQKRILLQCEVCSRSFRYNMELKAHARRWGHEQTKSSGSDSYQEVTDCEDCDFRGHSLLSYQRHLRMKHGKEIHFCRRCNARFDSLEEARRHRKEAEHRDAGPKIDRQCPHCFLIVRGLLALKEHLQNEHPERRHRCLRCGADFILKQELTQHVKNGRCSPTISDRAHKCIKCHFSTDSEAELLLHNILHREPDEQQRYLCFYCDKYFKKDTLRNHVKVHTTERNYICQICELSFSRSDALAKHTSRVHEMSRCVACRLCAAQFATSKHLNRHMSIHHERTKNFACSECSSRFYNKASLEKHIQLHEGKKYSCDHEGCIFKGRSEAELRTHRATHGSERNYHCRHCPYSAKTRAQLTKHIKSQHTEEGMALSCPHCDFTTKNRTHLQRHTNLHTGQKPFRCPHCPFSCTLLENLRKHVISSKLHPGKFLYECPDCDDLKTNLSKVLKAHLVSVHGRSASEAAAHISGVHRPEADTEPQGLVPVPSNRRKKSFAAPRDQEEEQLPTLASVALASNEEDVIFIEVDGGLESVLYQQSDHLEAYPPGRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298742;
- 90% Identity
- iTF_01298742;
- 80% Identity
- -