Basic Information

Insect: Rhaphigaster nebulosa
Gene Symbol: -
Assembly: GCA_948150685.1
Location: OX411310.1:117706627-117726208[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00033 0.069 15.0 1.2 2 23 633 656 632 656 0.93

2 16 0.0099 2.1 10.3 2.5 2 22 752 772 752 775 0.90

3 16 0.24 50 6.0 1.9 1 23 835 859 835 859 0.96

4 16 0.00049 0.1 14.4 0.6 1 19 918 936 918 938 0.97

5 16 0.025 5.3 9.0 0.3 3 23 982 1003 980 1003 0.94

6 16 0.00059 0.12 14.2 2.6 1 23 1035 1057 1035 1057 0.98

7 16 0.64 1.3e+02 4.6 4.3 1 23 1061 1083 1061 1083 0.92

8 16 0.14 30 6.7 5.8 3 21 1094 1112 1093 1113 0.95

9 16 0.00011 0.024 16.4 1.4 1 23 1123 1146 1123 1146 0.96

10 16 0.0047 0.99 11.3 0.7 2 20 1210 1228 1209 1232 0.92

11 16 0.00094 0.2 13.6 1.1 2 21 1260 1279 1259 1280 0.94

12 16 0.038 7.9 8.5 1.2 2 21 1406 1425 1405 1426 0.94

13 16 1.4 2.8e+02 3.6 0.0 2 20 1515 1533 1515 1535 0.88

14 16 4.4 9.2e+02 2.0 0.5 2 12 1548 1558 1547 1563 0.85

15 16 0.00031 0.065 15.1 0.4 3 23 1602 1622 1601 1622 0.97

16 16 0.0019 0.39 12.6 3.5 2 23 1697 1718 1696 1718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00033	0.069	15.0	1.2	2	23	633	656	632	656	0.93
2	16	0.0099	2.1	10.3	2.5	2	22	752	772	752	775	0.90
3	16	0.24	50	6.0	1.9	1	23	835	859	835	859	0.96
4	16	0.00049	0.1	14.4	0.6	1	19	918	936	918	938	0.97
5	16	0.025	5.3	9.0	0.3	3	23	982	1003	980	1003	0.94
6	16	0.00059	0.12	14.2	2.6	1	23	1035	1057	1035	1057	0.98
7	16	0.64	1.3e+02	4.6	4.3	1	23	1061	1083	1061	1083	0.92
8	16	0.14	30	6.7	5.8	3	21	1094	1112	1093	1113	0.95
9	16	0.00011	0.024	16.4	1.4	1	23	1123	1146	1123	1146	0.96
10	16	0.0047	0.99	11.3	0.7	2	20	1210	1228	1209	1232	0.92
11	16	0.00094	0.2	13.6	1.1	2	21	1260	1279	1259	1280	0.94
12	16	0.038	7.9	8.5	1.2	2	21	1406	1425	1405	1426	0.94
13	16	1.4	2.8e+02	3.6	0.0	2	20	1515	1533	1515	1535	0.88
14	16	4.4	9.2e+02	2.0	0.5	2	12	1548	1558	1547	1563	0.85
15	16	0.00031	0.065	15.1	0.4	3	23	1602	1622	1601	1622	0.97
16	16	0.0019	0.39	12.6	3.5	2	23	1697	1718	1696	1718	0.96

Sequence Information

Coding Sequence: ATGGAAGTTCGTAAAAATGTTAATGGAGCTTGTCGTCTCTGCCTTCATGGAGAAGGAAGGATATCAGTTTTTGAAGAAAATCCAAAATGTTCCATAACACCTGAGAGTATATACGATTGTGTATCTGTTAAGATAACTAAAGAGGATAGATTACCTAAAGGCATCTGCGAAAACTGTTTATCGAATGTTAAAAATTGGTGTGTATTTAAAGATAACTGTGATAAAACACAAGAAACTTTGAATGACTGGCTAAATTGTAATGGGATCAGTGGTGATGTCAAAGAGTTAGAAGTTGGCGCATCAAAGAACTTGTTTAATAGTACACCTGTAAAACCTTTTGAAATAAATCATGGGAGTGAAAATTCTGATCTTCCAGTCTCGGTATTACCTGAAGTGGTGGAGTCAGATATATGCCTTGATGAAAACAAGAAAGTGGGGAAAACATTATCTGATACAGGTAGGCATTTTTCGGAAGAAAGAACAGGAGAAATTTCAAGCACTTTATTTACTGAGGAAGAAAATAAACAGTCTTCAATAGTCAGCTCAACAAAAGAGATTGCAGATTCTTGCCAAGATAGTAATAGAATCAGTTTAAATGATTGCATGGAAATTGAAAATGTCGAATCTCATAATATTCCTAAAGGTTTCCTTAAGACGACTGAATCAGTTATGGCGTTATGTAACGAATTACAAGAAAGTATTCAGAAGAAAGGCACATCTAATTCCATTGAGTTAATGGAAGTAACTTCCAATGATATAGGAAATGCTGTACATAAAATTCCACAGTCAACCAGTTCTGATAACTTATCTTCCAATGAATTAAATGATTGCTTTTCAGCTATAAACAGCTCTGTCGATGCCGTGGAGGCTTTGTTAGAAAGTTCTTCTCATATAGAGAAAGTAAATAATACGATATCTGTCGAATCCAATCCTGATTCGATGGACATAGGGAACTTGGCAAGTTCTCAGAGTGGAATGGAACCTGTTAGTGACTCAGAGGCTAACAAATGTCTAGATGTTAGGTTAAATGAAACTGCTGACATAACTGAGGCATCACCATCTGAAAAAGTTTCATGTGCAACAACGGAATCCCCAGATTCAGCAGCCAACAATGTCAGCGAGGATTCTAGGATTAAATTATCGGATAATAAAGTTATTCCTGATACTACAACAGAGCCTACACCAAAGGAAAATGAAGCACCAAAGAATGACCCTTCTCTCGATTCAGACAAAGAAAATTCTACTCCTAACTCTGTTACACCAGTCAGTGATGTTTCTAAAGAAAAGCAGAAAGTCTCAGAATCACTCGAAACACCAGCAGAAGGAGAAAACCAATCACTATCTGGTTTAAGAATAGAGTCCATTTCGACTTTAACTATTGAAACTTCAGAATTTTTCAATTCTCAAGATGGTAAAACAAGTTCTGAAAATAATCCTTCAACAGAGCCTGTAGAAAAAGTTGCCGAATCTAATACCAATTTGGCTGAAAGTTCTAGCTCAGTTGTGGATGGTCCTAGTTCAGGAAATGCTAAGGAAAGTCCACCTGTGGAAGGACAAAATTCAGAACCTGAGGTTATTTCAGAACAGTTGAGCAATCAATCATCTGTTCAAGATAATAACACCGATGAAGATAGGTCTGAAATAAATGTCAATGACCATCTAGAAGTGGAGATGAATAGTAATAGCAGGCCTGATGCTGACCAGGAAATTGTTTTTTCGCAGCTGACAGTACAAAATATTAAACAAGAACCAATAGATACTCATGAAACAATGCCTTCTGGCAATACCAATCCCATTTTTCCTATAAGGGTAAAATCTGAATTCAGCTCCTACGACTTTGATGATCCCACTGGTGATGTTGGAAACCATCCTTCTGTCTCAGGGCAAGAAACTAATAAATGTGGTATTTGTAATAGAAAATATTCTTCTTTGTCAAATTATCTGAAACATCTCCAAACCAAAGTTCATTTGTACAATGCTTCATTAGGCCCCACAGAAATTATGCCTTTACCTAACGATGGCACGGTGTCAGATCATGTCGATTCTAGGATGAATTATTCAGATTCGTATTCAGAGGATTCTAGACTTAGTGCCTATTCCAACGATTCTCCTATGTTGCGTTCTAGGCTTTGCTCTGAAGATTTTATACAGCCTTCAATAAATATCAACAAGTATCAACAATCTCTGATTCGGCAGGCACAACCTAGAATGCCTTACCCGTCATCTCTTAGTAAATTACCTAGAAGAAAAGAGAAATGCAAGTTATGCAATACCAAATTTACATATATATCAGAAATGAGGAGACACTTACTTTCCAAAAAACATAAAAGTAACGAACGTTTGTTGCGAGATAATGACCGTATGATGCGAGAAAACGAGCGAATGATAAGGGTAAGTGAGCAAATGGTCAGGGAAAAAGAACGAAACATGAAAGAAAGGTCGTTGATGTACTCTAGAAAAGAAGAAACATCGCCATTACAATCAGAAAAGAATCAATCACCATTCATATGCCCTATTGAGAATTGTCATTATTCTTGTCAAAAAGGGGTTCGACTGTTAGCTCACATGAGGACACATGGGATTGGACAGCCTCCTGCAGCTCCCTTGCCGCAAGTTACAAAAGAACCTGATAATGTTACAAATAAGCCAAAATTGAGTCTGAGGCAACAGGAATTACTTAAAAAAGAGTTAGAAAAACGAAAAGCTAATACTTTCAGTGAACAAATTGTTGTCGAACCTTTGATTCATGATTACAAATGTGAAGGTTGTGGTAAGACGTTTCTACGAGAGAGTGGTCTGAAGAAACACAGTTACTACTGTTCTGCTGCAGTTATTGCTAATCAACAAGAAGATGAAGATGAAGAAGAAGAAGAGGAAGAAGAAGAAGAACCACCTAAGTTATCTGATAATATTCCCGATAACTTACAAATAAAAAAAATGCATTGCCCAATTTGCAATCTGACATTTGCTGCTAAAAGTGTATTTATCAGTCATGTCCAGATTTATCATAAGGGCTCTACGTTGGAAAGTGGGCTTTTCAGACCAAAGAAGGCTGTTATTACGTCAAATAAATTACGTGTCAAGAGCAGGAAAGGTCATGGCTATGTGTGTAATCATTGTGGTAAAAAATTCAATCTATTGTCATCATTGAATTTTCATTTAAAGGTTCATAGCACCAAACATATTTGTAAAATTTGTAAGAAAGGATATGACTCTCGGAGGGCTTTTATGGATCATTGTCGATTGCATTTCCTACCACCTGGGTCAAAACAGACTTTATGCCATAAATGTTTTAGGGTGTTCAAAACAAGAGGAGAATTTTCCCACCATCGAAAGCATGACATGTGCTCAATCAAATTGAAAATCTATACTTGTAATATTTGCCAGCATTCGTTCAAAGACCCTACAGCTTTAGAAGAACATAAAATCAGGTTTCATAATGATGTGCTTGATGTTTCAGACGAAGAAGAAACTTCGCCTGTGGATCGTAGGCCAATAGTACAAAATTTGTCTATCAATCGTCAGAATTTTGATACTGGTAATGAAAACCGTCCCAGTACATCATCAAAATCGCACTCTTCTTACATAAATCAGTCTTCTAATTCGACAAAGAATGATCCATTTTTGCATTGTGATGTGTGTGATAGAGATTATGCCACTTTAGCTTCATTGAAAAAACACATGTGGAAGTATCATCAAACCAAACCGATGTTGACTCGGCAATTAGAAATTGCTAAGAAAAATAACGTTCTTAAAGCTAATGTTTCTAAATGTTGGAAATGCAAACACTGTAGAAGGGTGTTTGCCACTAGAAGAATGCTTGTTGTCCATTTGAAAAAATGCAAATATAACGCTTTCGAGTTAGAAGATGGAATGTGTTTGCAATGTGGAAAATGGTGTGAATCGGGGAAATCTAGAATCTGTAGGTTTTGTCTCCCAGACTTAAAGAAAATTCCAAAGGCCAAAAAAAGTTTACCTGAATCTAACTTTCTGATGACGCCAAAGTCAGAATTCATTATGAATCCAAAGCAAGAAGTAAATTCAGCCCCTGCCAGAATACTGAATCCTGGTTTCCCAGGTTCATTGCCTAAAATAAAAGCTGCACCTCCTATAAAGGGAATACGGCTTATGAAATGCCCTGTTGGTAACAAGTATTTTAGGAGTGAATTATTAATGATCAAGCACTATTCTCAGTGTGATGGAAGCTGCGAGAACCGCTGTAGTCATTGCAGAAAACTCTTCAATTCTGCAAAAGAATACAGAGTTCATTTATTAAACAGTAACTGTTATGGGCACAGCAGAGGTAAACCCAAAGCTGTCAAGTTACCCTTGAAGCAGGCAAACAGCTTCTCTGTATCCAACTATTCTGAGGTTGAGCCGCTACCGCTTGCTACCAAGAGCAGTGATGGAGATGTATCTACTGAAATGAGCACGATAGACAGTAGCATTTCTGAAGAAAATAGTATGATGGGATTGGACTCGGGATTGTTAAATGACCCTTCCAATAAAATAGCTGAAGAAAAATCGATAAAAATTGGTAGGGTTTGCACAATTTGTAACAAAGTTATAACTATGCAAAGAGGTGTCTATCGTCATGTTTACAGCTGTTTTAAAATTAACATGCTTACTCAAGAAAGTGTATCATGTAGAAAATGTAGTAGAACATTCAGTAAACATTTATCTATGAAGGAAAACACTGCTGCGATCAGGCAGCATATACTCGACTGTCATTATATTCCTTACTATGAAGGGGAAGGACTTCTAGAAGATGGAAGTCCTTCAGAAGTTCCCCCTCCCCTATTATGTTATGTTTGTTCGTTCGGCTTTTCAAGTAATGATAATCTTAGGCGACACATTTTGGAGCACAGGAGTAGGAAAGATGAAGTAAACAACATTGTGCTCCTTTTAGAAGCCGAACTGTTATCTGAAAAAAGAATAAATTCTGGAACAGTTTCTTATAACATTCAAATACAGCCGGAAAGCACTGAAACTTTATCTTCTATACCAGTGAAAAAGAATAATGTATTGCGTTTCAAAGTCCCTGGAATGCATATAGAACCACGAAAAATAATAAGAAAAAAGCTACTGGAATGTGAGAAGTGCAGCAGAAAATTTACTAATCGCAATAAATTTTTAAGGCATAAGAAAGTTCATGGGATTGTTACACAAAGTGTGTTTCATGAAGTTTCTGAAAACTATTTAGACTTCATTGCTGACCATGCACAACCACAATCGACACCTCCACCAGAACCAACGCCACCTCCACCACCCAGTAATTAA
Protein Sequence: MEVRKNVNGACRLCLHGEGRISVFEENPKCSITPESIYDCVSVKITKEDRLPKGICENCLSNVKNWCVFKDNCDKTQETLNDWLNCNGISGDVKELEVGASKNLFNSTPVKPFEINHGSENSDLPVSVLPEVVESDICLDENKKVGKTLSDTGRHFSEERTGEISSTLFTEEENKQSSIVSSTKEIADSCQDSNRISLNDCMEIENVESHNIPKGFLKTTESVMALCNELQESIQKKGTSNSIELMEVTSNDIGNAVHKIPQSTSSDNLSSNELNDCFSAINSSVDAVEALLESSSHIEKVNNTISVESNPDSMDIGNLASSQSGMEPVSDSEANKCLDVRLNETADITEASPSEKVSCATTESPDSAANNVSEDSRIKLSDNKVIPDTTTEPTPKENEAPKNDPSLDSDKENSTPNSVTPVSDVSKEKQKVSESLETPAEGENQSLSGLRIESISTLTIETSEFFNSQDGKTSSENNPSTEPVEKVAESNTNLAESSSSVVDGPSSGNAKESPPVEGQNSEPEVISEQLSNQSSVQDNNTDEDRSEINVNDHLEVEMNSNSRPDADQEIVFSQLTVQNIKQEPIDTHETMPSGNTNPIFPIRVKSEFSSYDFDDPTGDVGNHPSVSGQETNKCGICNRKYSSLSNYLKHLQTKVHLYNASLGPTEIMPLPNDGTVSDHVDSRMNYSDSYSEDSRLSAYSNDSPMLRSRLCSEDFIQPSININKYQQSLIRQAQPRMPYPSSLSKLPRRKEKCKLCNTKFTYISEMRRHLLSKKHKSNERLLRDNDRMMRENERMIRVSEQMVREKERNMKERSLMYSRKEETSPLQSEKNQSPFICPIENCHYSCQKGVRLLAHMRTHGIGQPPAAPLPQVTKEPDNVTNKPKLSLRQQELLKKELEKRKANTFSEQIVVEPLIHDYKCEGCGKTFLRESGLKKHSYYCSAAVIANQQEDEDEEEEEEEEEEPPKLSDNIPDNLQIKKMHCPICNLTFAAKSVFISHVQIYHKGSTLESGLFRPKKAVITSNKLRVKSRKGHGYVCNHCGKKFNLLSSLNFHLKVHSTKHICKICKKGYDSRRAFMDHCRLHFLPPGSKQTLCHKCFRVFKTRGEFSHHRKHDMCSIKLKIYTCNICQHSFKDPTALEEHKIRFHNDVLDVSDEEETSPVDRRPIVQNLSINRQNFDTGNENRPSTSSKSHSSYINQSSNSTKNDPFLHCDVCDRDYATLASLKKHMWKYHQTKPMLTRQLEIAKKNNVLKANVSKCWKCKHCRRVFATRRMLVVHLKKCKYNAFELEDGMCLQCGKWCESGKSRICRFCLPDLKKIPKAKKSLPESNFLMTPKSEFIMNPKQEVNSAPARILNPGFPGSLPKIKAAPPIKGIRLMKCPVGNKYFRSELLMIKHYSQCDGSCENRCSHCRKLFNSAKEYRVHLLNSNCYGHSRGKPKAVKLPLKQANSFSVSNYSEVEPLPLATKSSDGDVSTEMSTIDSSISEENSMMGLDSGLLNDPSNKIAEEKSIKIGRVCTICNKVITMQRGVYRHVYSCFKINMLTQESVSCRKCSRTFSKHLSMKENTAAIRQHILDCHYIPYYEGEGLLEDGSPSEVPPPLLCYVCSFGFSSNDNLRRHILEHRSRKDEVNNIVLLLEAELLSEKRINSGTVSYNIQIQPESTETLSSIPVKKNNVLRFKVPGMHIEPRKIIRKKLLECEKCSRKFTNRNKFLRHKKVHGIVTQSVFHEVSENYLDFIADHAQPQSTPPPEPTPPPPPSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764114;
90% Identity: -
80% Identity: -