Basic Information

Insect: Rhaphigaster nebulosa
Gene Symbol: ham
Assembly: GCA_948150685.1
Location: OX411309.1:58656595-58669647[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0065 1.4 10.9 0.0 2 23 53 75 53 75 0.93

2 9 0.56 1.2e+02 4.8 1.2 1 23 82 105 82 105 0.90

3 9 9.9e-09 2.1e-06 29.2 0.3 1 23 111 134 111 134 0.98

4 9 6.6e-06 0.0014 20.3 2.5 1 23 140 162 140 162 0.95

5 9 2.1e-05 0.0044 18.7 5.0 1 23 168 190 168 190 0.99

6 9 0.00052 0.11 14.4 0.7 2 21 198 217 197 218 0.95

7 9 7.1e-09 1.5e-06 29.7 0.7 1 23 548 570 548 570 0.98

8 9 2.6e-07 5.4e-05 24.8 1.7 1 23 576 599 576 599 0.97

9 9 2.1e-06 0.00044 21.9 3.4 1 23 605 627 605 627 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0065	1.4	10.9	0.0	2	23	53	75	53	75	0.93
2	9	0.56	1.2e+02	4.8	1.2	1	23	82	105	82	105	0.90
3	9	9.9e-09	2.1e-06	29.2	0.3	1	23	111	134	111	134	0.98
4	9	6.6e-06	0.0014	20.3	2.5	1	23	140	162	140	162	0.95
5	9	2.1e-05	0.0044	18.7	5.0	1	23	168	190	168	190	0.99
6	9	0.00052	0.11	14.4	0.7	2	21	198	217	197	218	0.95
7	9	7.1e-09	1.5e-06	29.7	0.7	1	23	548	570	548	570	0.98
8	9	2.6e-07	5.4e-05	24.8	1.7	1	23	576	599	576	599	0.97
9	9	2.1e-06	0.00044	21.9	3.4	1	23	605	627	605	627	0.99

Sequence Information

Coding Sequence: ATGGTCAGTGACACTAGGGGTGACTTTCCAAATTTACGCCGGGTTTTTCCAAGCTCTCGACCAATGGGAAGAAGATGGTACCCCAGGCTACCTCTCGCTTCCCAACAGTCCAGTACAGGCGAGGAAGATAGGGAAGAAGAGGAGGAAGACTCAGCTCGCTGCCCTGTCTGCGATTTATCATTCCCTGACGTAGACCTGTTGGACGACCATCTTGTGAGTGGTCACAGGTACGTCGGAGGACAGTTTAGGTGCAACAAGTGCGCCAAAGGCTACAGTTGGCGACCCTGTCTAGTACAACACCAGGCTCTACAACACGGCGAAGTTAAAAGATATCCTTGTGAAAACTGCAACAGAGTTTTTACAGACGCCAGCAATCTTCAAAGACATATAAGAAGGGATCACGTCGGAGCTAGGTCACACGCTTGCGAACAGTGTGGTAAGACTTTTGCGACGTCCTCAGGCCTCAAGCAGCACACACACATTCACTCGAGTGTCAAACCATTCCAGTGCGAAGTTTGTTTCAAGGCATATACGCAGTTCAGCAATTTATGTCGACATAAGAGAATGCATGCAGATTGCAGAATGCAGATAAAATGTGGAAAGTGTGGCCAGACCTTCTCAACGGGGACATCGCTCTCCAAGCACAAGAGATTCTGTGATTCGACCTCGCCAGTAACATCGCCTGGAGGCATGAATCTTCCGCAGCCTGGTGGAAACCCCTTCCTTATGTACCCCAGGCCACCTAGTGGTCTTCCTTTTTATCCCCCTATGATCCCAACTTACCCGTCGCTGTTCCACAACTCTTCTCCTGGGTTCCTCCCGAACCCTTTGTTGTTCAAGAACCCAGAAGAGGAGATGCAGATCAGCACACAATTGACCTTAGAGGCATACCAGAAATTCAGTCGTCAGAGGACTGGTTCTTCACAGGATGGATCGCCCTCTCCTACAAGAACCTCTTCTCCTATCGATACTGGGACACCTTCAATAAATTCCATATTGAGCCTCAATAAGGTATCACCACCTACAGCGGAAGAAGCAGCCTCCAATGAAAGGCCGTCACCAGCTCGCCCACCAATGTCAGCGAACTTTCCAAAATTTGAAGAATCTCGACCAAATCATTCTTTAAGCGATGGAGCGCAGTCTCCTGTGTCCTCCAAAGCTGGCGAAACCACGTGCGACCAACCGCTAGATCTGAGCGTTAGCAGAAAAAGAAGCAGAGAATCATCACCAATAACAATGCGAAGGACACCTTCACCACCCATTAGCAAGAACGATGAAACGCCGAAACGAAGCACTGAGCTAACTGTGAAACATATAAAAGATCTTACACCTTCACCACCAGAAGACTCATCTTCGTCTCCTGACACTAACGATAAAATGCCTCAGATGGCTTATCCGAGGCCAATCCATCCAATGTTTTTAGAAGCCCTATATAGGCCTCAGTTTCCAGGATTCACACCTCAACGTGAGCCGAACTTCCAGTTTGGGCCTCGGCCATTTCCATTTTTAGGATCTATGGTCAATGGTGTAGCGAATAATCAGCGTCCATATGAGATGATGCGCCCACAAATCAATAACTTTAACAAGCCTTATCAAGATGTTTTGTCGAATTCTGCTAATGGAGGGAAGTTGAAGGACCGCTATGCTTGTAAGTTTTGTGGAAAAGTCTTTCCAAGATCAGCAAATTTGACTAGACACCTGAGGACCCACACTGGAGAGCAACCATATAAATGCAAGTATTGCGAAAGGTCTTTTAGTATATCGTCAAACTTACAAAGGCATGTAAGGAATATTCATAACAAAGAAAAACCCTTCAAGTGCCCTCTATGCGATAGATGTTTTGGCCAACAGACTAATTTGGACCGACACTTGAAGAAGCATGAAGGTGAAGATGGAAGTGGTGTGGTATCTGTAGCTGACAGTCCTAGCAGTAATGAGGCTGAGAGGGAGGACACTTATTTCGATGAGATAAGATCTTTCATGGGGAAGGTGACCTACGGAGCGGGGCTTTATCAACCTCAAGGTGAACCGAATGAGACGGATTCCACATCAGAGGAGTGTTCACCTGCAGTATCTCCTGCTGATACACCGATTGCTATGGTCATCAGAAAACAATACTCTCCTTTATCTTACAAGGATGAGACATTAAATAATAACACATCAGAAGCTGAACCACTTCAAGTAACAACCTAA
Protein Sequence: MVSDTRGDFPNLRRVFPSSRPMGRRWYPRLPLASQQSSTGEEDREEEEEDSARCPVCDLSFPDVDLLDDHLVSGHRYVGGQFRCNKCAKGYSWRPCLVQHQALQHGEVKRYPCENCNRVFTDASNLQRHIRRDHVGARSHACEQCGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCGKCGQTFSTGTSLSKHKRFCDSTSPVTSPGGMNLPQPGGNPFLMYPRPPSGLPFYPPMIPTYPSLFHNSSPGFLPNPLLFKNPEEEMQISTQLTLEAYQKFSRQRTGSSQDGSPSPTRTSSPIDTGTPSINSILSLNKVSPPTAEEAASNERPSPARPPMSANFPKFEESRPNHSLSDGAQSPVSSKAGETTCDQPLDLSVSRKRSRESSPITMRRTPSPPISKNDETPKRSTELTVKHIKDLTPSPPEDSSSSPDTNDKMPQMAYPRPIHPMFLEALYRPQFPGFTPQREPNFQFGPRPFPFLGSMVNGVANNQRPYEMMRPQINNFNKPYQDVLSNSANGGKLKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEGEDGSGVVSVADSPSSNEAEREDTYFDEIRSFMGKVTYGAGLYQPQGEPNETDSTSEECSPAVSPADTPIAMVIRKQYSPLSYKDETLNNNTSEAEPLQVTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309649;
90% Identity: iTF_00764031;
80% Identity: iTF_01298595;