Basic Information

Insect: Rhaphigaster nebulosa
Gene Symbol: ham
Assembly: GCA_948150685.1
Location: OX411309.1:58656595-58669647[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.83 6.3e+02 1.9 0.3 18 29 83 94 79 105 0.78

2 6 0.0042 3.2 9.2 0.1 19 43 113 134 107 135 0.89

3 6 0.15 1.2e+02 4.2 0.3 19 38 142 158 139 163 0.89

4 6 1.1 8.4e+02 1.5 6.4 6 31 186 211 181 217 0.73

5 6 9.8e-05 0.074 14.4 0.1 18 41 549 569 544 571 0.89

6 6 0.0095 7.2 8.1 8.5 17 44 576 600 570 627 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.83	6.3e+02	1.9	0.3	18	29	83	94	79	105	0.78
2	6	0.0042	3.2	9.2	0.1	19	43	113	134	107	135	0.89
3	6	0.15	1.2e+02	4.2	0.3	19	38	142	158	139	163	0.89
4	6	1.1	8.4e+02	1.5	6.4	6	31	186	211	181	217	0.73
5	6	9.8e-05	0.074	14.4	0.1	18	41	549	569	544	571	0.89
6	6	0.0095	7.2	8.1	8.5	17	44	576	600	570	627	0.94

Sequence Information

Coding Sequence: ATGGTCAGTGACACTAGGGGTGACTTTCCAAATTTACGCCGGGTTTTTCCAAGCTCTCGACCAATGGGAAGAAGATGGTACCCCAGGCTACCTCTCGCTTCCCAACAGTCCAGTACAGGCGAGGAAGATAGGGAAGAAGAGGAGGAAGACTCAGCTCGCTGCCCTGTCTGCGATTTATCATTCCCTGACGTAGACCTGTTGGACGACCATCTTGTGAGTGGTCACAGGTACGTCGGAGGACAGTTTAGGTGCAACAAGTGCGCCAAAGGCTACAGTTGGCGACCCTGTCTAGTACAACACCAGGCTCTACAACACGGCGAAGTTAAAAGATATCCTTGTGAAAACTGCAACAGAGTTTTTACAGACGCCAGCAATCTTCAAAGACATATAAGAAGGGATCACGTCGGAGCTAGGTCACACGCTTGCGAACAGTGTGGTAAGACTTTTGCGACGTCCTCAGGCCTCAAGCAGCACACACACATTCACTCGAGTGTCAAACCATTCCAGTGCGAAGTTTGTTTCAAGGCATATACGCAGTTCAGCAATTTATGTCGACATAAGAGAATGCATGCAGATTGCAGAATGCAGATAAAATGTGGAAAGTGTGGCCAGACCTTCTCAACGGGGACATCGCTCTCCAAGCACAAGAGATTCTGTGATTCGACCTCGCCAGTAACATCGCCTGGAGGCATGAATCTTCCGCAGCCTGGTGGAAACCCCTTCCTTATGTACCCCAGGCCACCTAGTGGTCTTCCTTTTTATCCCCCTATGATCCCAACTTACCCGTCGCTGTTCCACAACTCTTCTCCTGGGTTCCTCCCGAACCCTTTGTTGTTCAAGAACCCAGAAGAGGAGATGCAGATCAGCACACAATTGACCTTAGAGGCATACCAGAAATTCAGTCGTCAGAGGACTGGTTCTTCACAGGATGGATCGCCCTCTCCTACAAGAACCTCTTCTCCTATCGATACTGGGACACCTTCAATAAATTCCATATTGAGCCTCAATAAGGTATCACCACCTACAGCGGAAGAAGCAGCCTCCAATGAAAGGCCGTCACCAGCTCGCCCACCAATGTCAGCGAACTTTCCAAAATTTGAAGAATCTCGACCAAATCATTCTTTAAGCGATGGAGCGCAGTCTCCTGTGTCCTCCAAAGCTGGCGAAACCACGTGCGACCAACCGCTAGATCTGAGCGTTAGCAGAAAAAGAAGCAGAGAATCATCACCAATAACAATGCGAAGGACACCTTCACCACCCATTAGCAAGAACGATGAAACGCCGAAACGAAGCACTGAGCTAACTGTGAAACATATAAAAGATCTTACACCTTCACCACCAGAAGACTCATCTTCGTCTCCTGACACTAACGATAAAATGCCTCAGATGGCTTATCCGAGGCCAATCCATCCAATGTTTTTAGAAGCCCTATATAGGCCTCAGTTTCCAGGATTCACACCTCAACGTGAGCCGAACTTCCAGTTTGGGCCTCGGCCATTTCCATTTTTAGGATCTATGGTCAATGGTGTAGCGAATAATCAGCGTCCATATGAGATGATGCGCCCACAAATCAATAACTTTAACAAGCCTTATCAAGATGTTTTGTCGAATTCTGCTAATGGAGGGAAGTTGAAGGACCGCTATGCTTGTAAGTTTTGTGGAAAAGTCTTTCCAAGATCAGCAAATTTGACTAGACACCTGAGGACCCACACTGGAGAGCAACCATATAAATGCAAGTATTGCGAAAGGTCTTTTAGTATATCGTCAAACTTACAAAGGCATGTAAGGAATATTCATAACAAAGAAAAACCCTTCAAGTGCCCTCTATGCGATAGATGTTTTGGCCAACAGACTAATTTGGACCGACACTTGAAGAAGCATGAAGGTGAAGATGGAAGTGGTGTGGTATCTGTAGCTGACAGTCCTAGCAGTAATGAGGCTGAGAGGGAGGACACTTATTTCGATGAGATAAGATCTTTCATGGGGAAGGTGACCTACGGAGCGGGGCTTTATCAACCTCAAGGTGAACCGAATGAGACGGATTCCACATCAGAGGAGTGTTCACCTGCAGTATCTCCTGCTGATACACCGATTGCTATGGTCATCAGAAAACAATACTCTCCTTTATCTTACAAGGATGAGACATTAAATAATAACACATCAGAAGCTGAACCACTTCAAGTAACAACCTAA
Protein Sequence: MVSDTRGDFPNLRRVFPSSRPMGRRWYPRLPLASQQSSTGEEDREEEEEDSARCPVCDLSFPDVDLLDDHLVSGHRYVGGQFRCNKCAKGYSWRPCLVQHQALQHGEVKRYPCENCNRVFTDASNLQRHIRRDHVGARSHACEQCGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCGKCGQTFSTGTSLSKHKRFCDSTSPVTSPGGMNLPQPGGNPFLMYPRPPSGLPFYPPMIPTYPSLFHNSSPGFLPNPLLFKNPEEEMQISTQLTLEAYQKFSRQRTGSSQDGSPSPTRTSSPIDTGTPSINSILSLNKVSPPTAEEAASNERPSPARPPMSANFPKFEESRPNHSLSDGAQSPVSSKAGETTCDQPLDLSVSRKRSRESSPITMRRTPSPPISKNDETPKRSTELTVKHIKDLTPSPPEDSSSSPDTNDKMPQMAYPRPIHPMFLEALYRPQFPGFTPQREPNFQFGPRPFPFLGSMVNGVANNQRPYEMMRPQINNFNKPYQDVLSNSANGGKLKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEGEDGSGVVSVADSPSSNEAEREDTYFDEIRSFMGKVTYGAGLYQPQGEPNETDSTSEECSPAVSPADTPIAMVIRKQYSPLSYKDETLNNNTSEAEPLQVTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01309649;
90% Identity: iTF_00764031;
80% Identity: iTF_01298616;