Rneb032577.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411311.1:60269922-60274575[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 3.6e+02 3.3 0.1 3 23 8 28 6 28 0.92 2 15 4 8.4e+02 2.1 2.3 1 23 272 295 272 295 0.89 3 15 0.0005 0.1 14.4 0.2 3 23 312 333 310 333 0.96 4 15 0.0012 0.25 13.2 0.1 2 23 339 361 339 361 0.96 5 15 0.00024 0.051 15.4 2.1 2 23 364 385 363 385 0.96 6 15 9.8e-06 0.002 19.8 0.9 1 23 391 413 391 413 0.97 7 15 2.5e-06 0.00053 21.6 2.5 2 23 420 442 419 442 0.94 8 15 0.0022 0.47 12.4 0.4 5 23 455 473 454 473 0.95 9 15 0.00018 0.038 15.8 1.6 2 23 479 501 478 501 0.97 10 15 0.0046 0.96 11.4 0.2 2 23 519 539 518 539 0.96 11 15 0.79 1.7e+02 4.3 1.2 5 17 549 561 547 567 0.84 12 15 2.9e-06 0.00061 21.4 0.4 1 23 575 597 575 597 0.99 13 15 3e-05 0.0063 18.3 6.4 1 23 603 625 603 625 0.97 14 15 4.6e-06 0.00097 20.8 2.5 1 23 631 653 631 653 0.98 15 15 0.0024 0.5 12.3 9.1 1 23 659 681 659 682 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGCAGTTGCTAGCATGTCCTGTTTGCACACTCTATCTTCGGGAAGGAATGTCCATGCAAAATCATTTAAATACTCATCCGAAAGATCAAGTTATAGAAGCTTTAGTTAGATTATATACTTCTGGAAGACCATTTAATGCTTACAGTCCTCCAGCTATCGTTAACCCTTATCAGGTTGTATCAGAAGAACATATATTTTTGGGTAGACAACAGGTTACCACTAATATAATTCATGCCCCTTTCATGGGATATCCCGTTTATCCCAACCAGCAAATATTGGGATCAAGTGAATTTTCTCAGTCCGAATCTGTTCAGTTGAATATTTCGGGGCAGGAATCAGGAGTTATAACCACATTAGTAAATTATTCAAATCAAGATGACTATAACAGAGACCAAATTGAGGATGCTAATCCAGCAAAAATAATTCCTGAACAATGTCAAATTAAGGAAAGCAATGAGATGATATTAAGTGATGTGCCGAGTACAAGTCATCCTCCTTCACCTATGAGCCATCATTCTGAAGCTACACACATTACAGATGAAGATGGACATTGTGACAATGTAATTGTTGCTGATGAACGAGATTACGAAGATGAAGATGTTGGAAAAGCACATTTGGATGATGAAAACGATCCAGAATTGAGTAGCTCTGGACTTAACATTGCTGCTGATGAGAAAATGCCTCCCAGAGGAGAACTCTCAGGACAAGAAAGTCTTGGAACTACTGTCAATTCAGTCTGGCTTCCAGAGGATTCAGTCATTTCAGATCCAATTTGGGTCAATAAGCAAGAAGACACGAAAAAGAAGTTTCCATGTCTTCATTGTCGTGAGGAGTTCACCTGCCCCAAGGAAAGGAGAGTTCATGTTGTTACTTTACACTGTTCAGCTGAAAATTCAGAAAGCAAGGCATTTCAAAAAGAAGTTATATGTCTAAAATGTGGTCTCCAACTTCAATCCCAAAAAGAACTTAAAGCTCATATGCGAACAGAGCATAAAAGGGTTTCTAGACAGTGTACAGTCTGTAATGAGGAATTTGTTACGCAAGAACTTTATGCAGAACATTTATTAAAAGTTCACCCTTTGGAATGTAGAACTTGTGGTAAAACATTTCATACCAAGAACAGTCTTTATATCCATGCGAAAATTCATATGCCCGTAAAACCATATGCCTGCACTCTCTGCTCTAAAACTTTTGTTACCAATCAGAAACTAAAAGAACATATGAATGGTCATACCGGTTTTGCACCTCTTCAGTGTAATTTGTGTGATAAAAAGTTTAAGCGCTATTCAAATCTAAAACAACATAAAAACAATGCACATTTACAAATTAAAAAAAAGTCTAAAGATTATTTTTGTGAATGTGGAGAAACTTTTAACACAAAAAAGAAGTTGGAATGGCACAAAGAAATACATGAATCTAAACCGAAACAATGTATGTATTGTAGCGAAAGGTATGTGCATCTTGCTAGCTTGACTAGACACATTCGTAAAGCTCATGATAGTCACTTTATTCCACAAACTGAATCAAATATTAAAAAAAAGAATGTGTCTTGCCCAATTTGCAATATGGTATTCATGGAAAAATCTTTAAAATTGCATATGTTACAACATAGTGCTCCTAGACAATATGGGTGTATAGTTTGTGGAAAACGTTTTCAAACTAAATGGAACTTACACTTCCATAGATGGACTCATGCATCTAGGATGTCAAAGCCTTTCAAATGTTCAATGTGCAAAGGTGCTTTTGTAAGACTTTCAGAGCTGCAAGCCCATCTCCGAACACATTATGGTACAAAACCGTTCACTTGTAATCATTGTGGTCGACAGTTCAATAGAAAACACAATTGGCAAAGGCATGAAAAGGAACATTTACAAGCTAAAAAATATAGCTGTAATGAATGTGGTAAATCCTTTCATCGTAGCTATTATTTAGTAGACCATTCACGAGTGCACACAGGAATAAAACCATATTCTTGTCATATTTGTAATAAAACTTCTTCTACCAAGTCTAATCACAATAAACATGTAAAAACTCACCATGCCCGAGAACCTATTAACTCAGAATCATAA
- Protein Sequence
- MEQQLLACPVCTLYLREGMSMQNHLNTHPKDQVIEALVRLYTSGRPFNAYSPPAIVNPYQVVSEEHIFLGRQQVTTNIIHAPFMGYPVYPNQQILGSSEFSQSESVQLNISGQESGVITTLVNYSNQDDYNRDQIEDANPAKIIPEQCQIKESNEMILSDVPSTSHPPSPMSHHSEATHITDEDGHCDNVIVADERDYEDEDVGKAHLDDENDPELSSSGLNIAADEKMPPRGELSGQESLGTTVNSVWLPEDSVISDPIWVNKQEDTKKKFPCLHCREEFTCPKERRVHVVTLHCSAENSESKAFQKEVICLKCGLQLQSQKELKAHMRTEHKRVSRQCTVCNEEFVTQELYAEHLLKVHPLECRTCGKTFHTKNSLYIHAKIHMPVKPYACTLCSKTFVTNQKLKEHMNGHTGFAPLQCNLCDKKFKRYSNLKQHKNNAHLQIKKKSKDYFCECGETFNTKKKLEWHKEIHESKPKQCMYCSERYVHLASLTRHIRKAHDSHFIPQTESNIKKKNVSCPICNMVFMEKSLKLHMLQHSAPRQYGCIVCGKRFQTKWNLHFHRWTHASRMSKPFKCSMCKGAFVRLSELQAHLRTHYGTKPFTCNHCGRQFNRKHNWQRHEKEHLQAKKYSCNECGKSFHRSYYLVDHSRVHTGIKPYSCHICNKTSSTKSNHNKHVKTHHAREPINSES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00764029;
- 90% Identity
- iTF_00764029;
- 80% Identity
- -