Basic Information

Insect: Halyomorpha halys
Gene Symbol: -
Assembly: GCA_000696795.2
Location: NW:592148-601743[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1 44 4.3 0.1 3 23 8 28 6 28 0.94

2 14 0.00048 0.019 14.9 0.2 2 23 312 334 311 334 0.96

3 14 0.0046 0.18 11.8 0.5 3 23 341 362 340 362 0.96

4 14 9e-05 0.0036 17.2 2.0 2 23 365 386 364 386 0.96

5 14 4.1e-06 0.00016 21.4 0.7 1 23 392 414 392 414 0.97

6 14 3.5e-06 0.00014 21.6 2.5 2 23 421 443 420 443 0.94

7 14 0.003 0.12 12.4 0.4 5 23 456 474 455 474 0.95

8 14 0.00025 0.0099 15.8 1.6 2 23 480 502 479 502 0.97

9 14 0.011 0.45 10.6 0.2 2 23 520 540 519 540 0.95

10 14 1.1 43 4.3 1.2 5 17 550 562 548 568 0.84

11 14 4e-06 0.00016 21.4 0.4 1 23 576 598 576 598 0.99

12 14 4.1e-05 0.0016 18.2 6.4 1 23 604 626 604 626 0.97

13 14 6.3e-06 0.00025 20.8 2.5 1 23 632 654 632 654 0.98

14 14 0.0032 0.13 12.3 9.1 1 23 660 682 660 683 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1	44	4.3	0.1	3	23	8	28	6	28	0.94
2	14	0.00048	0.019	14.9	0.2	2	23	312	334	311	334	0.96
3	14	0.0046	0.18	11.8	0.5	3	23	341	362	340	362	0.96
4	14	9e-05	0.0036	17.2	2.0	2	23	365	386	364	386	0.96
5	14	4.1e-06	0.00016	21.4	0.7	1	23	392	414	392	414	0.97
6	14	3.5e-06	0.00014	21.6	2.5	2	23	421	443	420	443	0.94
7	14	0.003	0.12	12.4	0.4	5	23	456	474	455	474	0.95
8	14	0.00025	0.0099	15.8	1.6	2	23	480	502	479	502	0.97
9	14	0.011	0.45	10.6	0.2	2	23	520	540	519	540	0.95
10	14	1.1	43	4.3	1.2	5	17	550	562	548	568	0.84
11	14	4e-06	0.00016	21.4	0.4	1	23	576	598	576	598	0.99
12	14	4.1e-05	0.0016	18.2	6.4	1	23	604	626	604	626	0.97
13	14	6.3e-06	0.00025	20.8	2.5	1	23	632	654	632	654	0.98
14	14	0.0032	0.13	12.3	9.1	1	23	660	682	660	683	0.96

Sequence Information

Coding Sequence: ATGGAACAGCAGTTGCTAGCATGCCCTGTTTGCACACTCTTTCTTCGGGAAGGAATGTCCAtgcaaaatcatttaaatactcATCCAAAAGATCAAGTTATTGAAGCTTTAGTTAGATTATATACTTCTGGAAGACCATTTAATGCTTATAGTCCTCCAGCTATTGTTAACCCTTATCAGGTTGTATCAgaagaacatatatttttgggTAGACAACAGGTTACCACTAATATAATTCATGCCCCCTATATGGGGTATCCTGTCTATCCCAACCAACAAATATTGGGATCAAGTGAATTTACTCAGTCTGAATCAGTTCAATTGAATATTTCTGGACAAGAATCTGGTGTTATAACcactttagttaattattcaaatcaaGATGACTATAATAGAGAACAAATTGAGGATGAAAATccagaaaaaattattcctgAAGAATGTCAAATAAAGGAGAGCAATGAGATGATTGAGATGAGTGATGTGCCGAGTACAAGTCATCCTGCTTCACCCATGAGCCATCATTCTGTTGCAACACATATTacaGATGAAGAAGGACATTGTGACAATGTAATTATTCCTGATGATCGAGATTACGAAGATGAAGAGGTTGGAAAAACACATTTGGATGAAGAAAACGATCCGGAATTGAGTAGCTCTGGTCTTAATATTGCTGCTGATGAGAAAATGCCTCCCAGGGGAGAACTCTCTGGACAAGAAAGTCTTGGAACAACTGTCAACTCAGTCTGGCTTCCAGAGGCTTCAGTCATTTCAGATCCAATTTGGACCAATAAGCAGGAAGATACAAAAAAGAAGTTTCCATGCATCCATTGTCATGAAGAGTTCACCTGCCCCAAGGAAAGGAGAGTTCATATTGTTACTTTGCACTGTTCTACTGAGAATTCAGAAAGCAAGGCATTTCAAAAAGAAGTGGTATGTCTAAAATGTGGACTCCAACTTCAATCCCAAAAAGAGCTTAAGGCCCATATGAGAACTGAGCATAAAAGAGTTTCTAGGCACTGTACAGTTTGTAATCAGGAATTTGTTACCCAGGAACTTTATGCAgaacatttattaaaagttcACCCTTTGGAATGTAGGACTTGTGGTAAAACGTTTCATTCCAAGAGCAGTCTCTACATCCATGCAAAAATCCATATGCCTGTAAAACCGTATGCCTGCACAATTTGCTCTAAAACTTTTGTTACCaatcaaaaactaaaagaacATATGAATGGTCATACTGGTTTCGCACCTCTCCAGTGtaatttatgtgataaaaagtttaagCGCTATTCAAATCTTAAACAGCATAAAAACAATGCACATTTACAGGTAAAAAAGAAATCCAAAGATTATTTTTGTGAATGTGGAGAAACGTTTAACACAAAAAAGAAGTTGGAATGGCACAAAGAAATACACGAATCTAAACCGAAGCAATGTATGTATTGTAGTGAAAGGTATGTTCATCTTGCTAGTTTGACTCGACACATTCGTAAAGCTCATGATAGTCACTTTATTCCACAAAatgaatcaaatattaaaaaaaagaatgtatctTGCCCAGTTTGCAATATggtttttatggaaaaatctctaaaattgCATATGTTACAACATAGTTCTCCAAGGCAATATGGGTGTATAGTTTGTGGAAAACGTTTTCAGACTAAGTGGAACTTACATTTTCATAGGTGGACTCATGCCTCCAGGATGTCCAAACCTTTTAAATGCTCTATGTGCAAAGGTGCTTTCGTAAGACTTTCAGAGCTACAAGCCCATCTTAGAACACATTATGGAACAAAACCGTTCACTTGTAATCATTGCGGTCGACAATTCAATAGGAAACATAATTGGCAAAGGCATGAAAAGGAACATTTACAAGCTAAAAAATATAGCTGTAATGAATGTGGTAAGTCCTTTCATCGTAGCTATTATTTAGTCGACCATTCACGAGTCCACACTGGTATAAAACCATATTCTTgtcatatttgtaataaaacttcCTCTACCAAATCTAATCACAACAAACATGTAAAAACTCACCACGCCCGAGAACCTATTAACTCAGAATCATAA
Protein Sequence: MEQQLLACPVCTLFLREGMSMQNHLNTHPKDQVIEALVRLYTSGRPFNAYSPPAIVNPYQVVSEEHIFLGRQQVTTNIIHAPYMGYPVYPNQQILGSSEFTQSESVQLNISGQESGVITTLVNYSNQDDYNREQIEDENPEKIIPEECQIKESNEMIEMSDVPSTSHPASPMSHHSVATHITDEEGHCDNVIIPDDRDYEDEEVGKTHLDEENDPELSSSGLNIAADEKMPPRGELSGQESLGTTVNSVWLPEASVISDPIWTNKQEDTKKKFPCIHCHEEFTCPKERRVHIVTLHCSTENSESKAFQKEVVCLKCGLQLQSQKELKAHMRTEHKRVSRHCTVCNQEFVTQELYAEHLLKVHPLECRTCGKTFHSKSSLYIHAKIHMPVKPYACTICSKTFVTNQKLKEHMNGHTGFAPLQCNLCDKKFKRYSNLKQHKNNAHLQVKKKSKDYFCECGETFNTKKKLEWHKEIHESKPKQCMYCSERYVHLASLTRHIRKAHDSHFIPQNESNIKKKNVSCPVCNMVFMEKSLKLHMLQHSSPRQYGCIVCGKRFQTKWNLHFHRWTHASRMSKPFKCSMCKGAFVRLSELQAHLRTHYGTKPFTCNHCGRQFNRKHNWQRHEKEHLQAKKYSCNECGKSFHRSYYLVDHSRVHTGIKPYSCHICNKTSSTKSNHNKHVKTHHAREPINSES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01298615;
90% Identity: iTF_01298615;
80% Identity: -