Basic Information

Insect: Rhaphigaster nebulosa
Gene Symbol: -
Assembly: GCA_948150685.1
Location: OX411308.1:82661109-82673801[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5e-05 0.011 17.6 0.5 1 23 162 185 162 185 0.97

2 18 2.1e-06 0.00045 21.9 0.2 2 23 190 211 190 211 0.97

3 18 4.7 9.8e+02 1.9 0.3 2 13 246 257 245 259 0.87

4 18 0.26 55 5.8 0.9 2 21 328 346 327 347 0.92

5 18 0.054 11 8.0 0.3 2 20 376 394 375 399 0.91

6 18 0.0001 0.022 16.6 0.1 2 21 475 494 474 495 0.94

7 18 0.0059 1.2 11.0 0.7 2 21 499 518 498 522 0.89

8 18 0.063 13 7.8 6.4 1 23 542 564 542 564 0.98

9 18 1.6 3.3e+02 3.4 0.1 3 23 573 594 572 594 0.92

10 18 0.016 3.4 9.7 4.3 1 23 599 621 599 621 0.95

11 18 0.00078 0.16 13.8 0.8 1 23 625 648 625 648 0.95

12 18 1.7e-05 0.0036 19.0 0.3 2 23 654 675 654 675 0.97

13 18 9.3e-06 0.002 19.8 0.6 3 23 683 703 681 703 0.96

14 18 0.0027 0.56 12.1 0.5 2 23 710 731 709 731 0.95

15 18 7.2e-06 0.0015 20.2 1.0 1 23 737 759 737 759 0.99

16 18 1.4e-06 0.00028 22.5 0.8 1 23 763 785 763 785 0.99

17 18 2.4e-06 0.00051 21.7 2.7 1 23 791 813 791 813 0.98

18 18 1.4 3e+02 3.6 6.3 1 23 819 842 819 842 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5e-05	0.011	17.6	0.5	1	23	162	185	162	185	0.97
2	18	2.1e-06	0.00045	21.9	0.2	2	23	190	211	190	211	0.97
3	18	4.7	9.8e+02	1.9	0.3	2	13	246	257	245	259	0.87
4	18	0.26	55	5.8	0.9	2	21	328	346	327	347	0.92
5	18	0.054	11	8.0	0.3	2	20	376	394	375	399	0.91
6	18	0.0001	0.022	16.6	0.1	2	21	475	494	474	495	0.94
7	18	0.0059	1.2	11.0	0.7	2	21	499	518	498	522	0.89
8	18	0.063	13	7.8	6.4	1	23	542	564	542	564	0.98
9	18	1.6	3.3e+02	3.4	0.1	3	23	573	594	572	594	0.92
10	18	0.016	3.4	9.7	4.3	1	23	599	621	599	621	0.95
11	18	0.00078	0.16	13.8	0.8	1	23	625	648	625	648	0.95
12	18	1.7e-05	0.0036	19.0	0.3	2	23	654	675	654	675	0.97
13	18	9.3e-06	0.002	19.8	0.6	3	23	683	703	681	703	0.96
14	18	0.0027	0.56	12.1	0.5	2	23	710	731	709	731	0.95
15	18	7.2e-06	0.0015	20.2	1.0	1	23	737	759	737	759	0.99
16	18	1.4e-06	0.00028	22.5	0.8	1	23	763	785	763	785	0.99
17	18	2.4e-06	0.00051	21.7	2.7	1	23	791	813	791	813	0.98
18	18	1.4	3e+02	3.6	6.3	1	23	819	842	819	842	0.97

Sequence Information

Coding Sequence: ATGAAGAGAAAACTGAAATATTTTGACATGGAAGACTTTGAATCTAAGCAATTTAGTTGTTTTGTTTGTACGGAGAAGTCTAAAGAAAGAGGAATTTCCTTATTACAGTCCCAAACTGCATTTTCACGAATATCTTTAGGTGAGAAGCTTCAAGAAATTCTAGGTACCAAGTATGTGGTTCTTGTTACTTCCAGAGATTCGATATGTTGGGATTGTGCTAGCTATATAAATTGGGTTGATCGTTGTGAACATAAAGTGGATTTAGTGAAAGAATATATAGTTAATCAAGTTAGTTTAAAATATAGAAAAATTGAAGTAACTCTTCAAGAAAATGTTGAAAAATGTGAGCCAATTCATGCAGCAGTGCCAAATCAGAAACCAACCACTCCACCTTTACCAGCTGTCATGCCTATCCAGCACACCGAAACAAAGGAAAAGGAGATAAAAGAGGATCCCCCTCCTAAGGCTAGGAAAAAGAAAGAATACTCCTGCAAATACTGTGGTAAAGGTTATGTCAGCTTGATGTCTTTAAGTATGCACATTCAAAGGCTTCATGGGGGTAAAGAAGTTTGTGAAGATTGTGGTGCCAGATTTGAGACATTAGCACAACTTAAAAGACACATGAAGAGTCATATTCCTGCAGATAAACAGTTAACCTGTGTCTCTTGTGGTTTTCATACAACAAATACTGAAGTTTATTGTCGGCATGTTTGTAATTCTAGTATTGTTTCATTGACCTGCGTTACTTGCAATAAAAGGTATGTTGATTCCAACTTCAAAAATGATTCCAGTTCTGGTACTTACCAATGTCAATCTTGTGCTACAGATGAAGCAACAAGACTTGAACGAGATCAACCTTCTCAGGAAGAAAATACTGGTGCTGAACTTGCCACAGAAATGCCTGAATTTTTCAAGGATCCTGAAAACAATAATGATGTCAGAAATTTAGAAAGAAGTGAGGAAGAATGTGTATCTTACTTACGGTGTGAAGGCTGTGAGGAACAATTTAAGCTTGCTGATTTAACAAAACATTTGTGTTTTATTAGAGGTGACACTGTGGAATTTGTTGAAGTAGAGGCACCTACATTTCCAGGAAAGAAGAGCCAACCCACTTCGGTTCCTTTATATTGTAAAGATTGTGGCGATCAATTTGTGAATATTGAAGACTTACGAAATCATTGGGATCATACTGGCCATTTAAGACAGGTAAGTACTACAGCTGTTGAGCTCAATAAAATAAGAGACAAATATAAGAAAACAGAAGCTACTTTTAAAGTTGTTAAACAGAATTTTAATATTCGTGCCATAATACCTGGTCAAAACGAAGAGGCACTGCGTTCTGCAGATGATTATAAGGATATGTTTGTTAAGGTTAGCAGAAATACTGATTCTATTGAAGATTTTGTTAAAAAAGATGGAAAAGAGTGTGAAACATGTGGTATTGTTTTTTCTACTAAAGAGCTACTAGAAGAACATCAACAAATGGATTGCCTGACATGTGTTACCTGCTCTGTCTCGTTCTATGACAACAAACTACTCAAGAGACACTATCTTTACACGGGGCATGCTAATAGGGTCATTCAGCCACCTCAGTTGGCTCCTGATAGTAAAGGACCTTTAGGATTCAAATGTCATCGCTGTATTAAAACATTTCAATCTAGATTTCTGCTTAAAAAACATTTTCAGGTTCATTATCGAGGTACAAATAAGGGAGCTTGTCAATTTTGTCTTCTAGAATTCGAAAACAAAAATGATATCCAGCAGCATGTTCTTGAAGTACATGGAGCACATTTATACAAATGCAGTCATTGTGATCGTACATTTATGTCAGAAACATTTAGAAATAGACATGAAGCAAAACACAAGGGTCCCTTTGAATGTCAGATATGCAATATAAAATTTATTAGTAAAAAATCTCTACTGTTACATAATGAAACATATCATCAAGGAGAATCTGGTTCCTGTACACTGTGTGGGAAAGTTTTTGAAGATCCTTTAGCTCTTAGGAAACATGAAAGGCGCCATTATTTTGAGAAACAGTTAGATTGTGATGTGTGTAAGAAGAGGTTTAGAAATAAAGCTCTTTTAATCACACATTTGAAGATTCATGGAGATAAAATCAAAACTAAATGTGATGTTTGCCAGCTTGGGTTCACTACTGAGGAAGCATTAAAAGAACATAAATTTTCTCATATGAAGCCTGGGAGATATAAGTGTCCAAGATGTAATGTTACTTTTGCTAACAAAGCGAATTTCTGGATGCATACAAAAACGCATGAAGCATGCTATGTTTGTACAGTTTGTAATAGAAGTTTTAGAGACACATCTTTGTTAGCTGTACACCGAAGAAAACATTGGCGTGTTAGGCCTTACCAATGTCCACATTGTTCTCGCACGTTTTCTGTGCCTGCGACTTTAAGGAGACATCTGCATGTACATACTCGTATTTATCCACATAAATGTGGTCTTTGTAAAAGGGGATTCCTCACAAGACATGCGTACCACAGACATACTGAAACAGTACATGGTGTTTCTCACAGCTTTCCACAAAGGAGGCCTAATATCCCTTCTTTGCCATTAAATGCAACTGACGAAGATATCTTCCAAGCTGCTGATACTCTAATTGCTGATGATTCATTAATGTTTAATGACTATCAAAATAAAGAAATTGAACAGGTATCATCAAATGATCTTATAACCAATGAAGTAGTTGTAGAAACAACTGAATTATTTGATGAAATTTTGCATTAA
Protein Sequence: MKRKLKYFDMEDFESKQFSCFVCTEKSKERGISLLQSQTAFSRISLGEKLQEILGTKYVVLVTSRDSICWDCASYINWVDRCEHKVDLVKEYIVNQVSLKYRKIEVTLQENVEKCEPIHAAVPNQKPTTPPLPAVMPIQHTETKEKEIKEDPPPKARKKKEYSCKYCGKGYVSLMSLSMHIQRLHGGKEVCEDCGARFETLAQLKRHMKSHIPADKQLTCVSCGFHTTNTEVYCRHVCNSSIVSLTCVTCNKRYVDSNFKNDSSSGTYQCQSCATDEATRLERDQPSQEENTGAELATEMPEFFKDPENNNDVRNLERSEEECVSYLRCEGCEEQFKLADLTKHLCFIRGDTVEFVEVEAPTFPGKKSQPTSVPLYCKDCGDQFVNIEDLRNHWDHTGHLRQVSTTAVELNKIRDKYKKTEATFKVVKQNFNIRAIIPGQNEEALRSADDYKDMFVKVSRNTDSIEDFVKKDGKECETCGIVFSTKELLEEHQQMDCLTCVTCSVSFYDNKLLKRHYLYTGHANRVIQPPQLAPDSKGPLGFKCHRCIKTFQSRFLLKKHFQVHYRGTNKGACQFCLLEFENKNDIQQHVLEVHGAHLYKCSHCDRTFMSETFRNRHEAKHKGPFECQICNIKFISKKSLLLHNETYHQGESGSCTLCGKVFEDPLALRKHERRHYFEKQLDCDVCKKRFRNKALLITHLKIHGDKIKTKCDVCQLGFTTEEALKEHKFSHMKPGRYKCPRCNVTFANKANFWMHTKTHEACYVCTVCNRSFRDTSLLAVHRRKHWRVRPYQCPHCSRTFSVPATLRRHLHVHTRIYPHKCGLCKRGFLTRHAYHRHTETVHGVSHSFPQRRPNIPSLPLNATDEDIFQAADTLIADDSLMFNDYQNKEIEQVSSNDLITNEVVVETTELFDEILH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00764028;
90% Identity: iTF_00764028;
80% Identity: -