Rneb003212.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:81987043-82011717[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 1.5e-05 0.0031 19.2 1.3 1 23 159 181 159 181 0.97 2 28 7.9e-05 0.017 16.9 0.7 1 23 194 216 194 216 0.97 3 28 0.00045 0.094 14.6 1.4 1 23 244 267 244 267 0.97 4 28 5.7e-05 0.012 17.4 0.8 2 23 274 296 273 296 0.96 5 28 1.9 3.9e+02 3.2 5.1 1 23 374 397 374 397 0.93 6 28 0.014 3 9.8 0.8 1 23 427 450 427 450 0.95 7 28 0.46 96 5.1 0.2 3 23 458 479 457 479 0.94 8 28 0.0019 0.4 12.6 2.2 1 23 549 572 549 572 0.96 9 28 3.6 7.5e+02 2.3 0.4 1 23 591 614 591 614 0.86 10 28 0.29 60 5.7 0.2 2 14 621 635 620 644 0.79 11 28 0.007 1.5 10.8 0.1 2 23 653 675 653 675 0.95 12 28 0.00076 0.16 13.8 0.5 1 23 681 704 681 704 0.95 13 28 0.00054 0.11 14.3 2.6 1 23 712 734 712 734 0.97 14 28 0.0034 0.71 11.8 1.1 2 23 795 817 794 817 0.95 15 28 0.00043 0.091 14.6 2.4 2 23 824 845 823 846 0.95 16 28 0.015 3.2 9.8 2.9 1 21 864 884 864 885 0.93 17 28 1.8e-05 0.0037 19.0 2.1 1 23 904 927 904 927 0.98 18 28 0.039 8.2 8.5 4.2 1 23 930 953 930 953 0.95 19 28 0.26 55 5.9 0.6 2 23 960 983 959 983 0.92 20 28 1.5 3.2e+02 3.4 0.0 1 23 1019 1042 1019 1042 0.91 21 28 1.5e-05 0.0032 19.2 3.5 1 23 1050 1072 1050 1072 0.97 22 28 0.00081 0.17 13.8 0.2 2 23 1078 1099 1077 1099 0.95 23 28 0.0053 1.1 11.2 0.4 3 23 1164 1185 1163 1185 0.96 24 28 0.096 20 7.2 0.3 2 23 1256 1278 1255 1278 0.95 25 28 2.8 5.8e+02 2.6 6.4 1 23 1352 1375 1352 1375 0.96 26 28 0.00099 0.21 13.5 0.3 1 23 1413 1435 1413 1435 0.97 27 28 8e-05 0.017 16.9 1.2 1 23 1441 1464 1441 1464 0.94 28 28 0.044 9.2 8.3 0.7 1 20 1469 1488 1469 1490 0.93
Sequence Information
- Coding Sequence
- ATGAACAATCCTACTTTGCAAAATTATGAAGAACTCTGCAGACTATGTGCTTCATATGATGCCATCAAGATTCCTATTTTCAGTGAACGTGGTAGAGAAAGAAACCTCAAAGATAAAATCACTACTTGCCTGCCATTTGATGTTTCTGAAGATGATTTGTTACCAAAGTCACTGTGTTACCGTTGTATTTATAATTTGGAGAATTTTTATGACTTCCGCCGTGGGTGCATTGATGCTAGAACCAGACTAGAAAATGTAATAAAAGAAGTTATGAAACATGAACCAAAGGAAGAAGGTACTTGTGTTAAGATAGAAGATATTAAAGAAAGGAATGTAGACAATGGGCACCAGATAGAAGATGATCTGATTGAATCTGATGGTGAAGGAGATTGTCCAAATCCTGCTGATTTCTTAGAGGCTTGCTTGGGTGAATCACCTCATAATCCTAAGCCTGTAGATGAAGAAGAAGGATCTTATCCTTGTAGGATTTGTGATAGGCAATTTAATTCAAAAAGTTCTCTTACAATACACTTGAAGTTTCATCAAGACAGTCTTGGTCAAGAAAATGATAAAGAAAATTATGCTTGCTATGTTTGTGAAAAAGTATTTTCAAGTAAAGGCCATTTGGCACTTCACTCTAAAGTTCATATTGGAGAGACAAGTTCACCTGCAGTGTCCAATTCTAGTAGATCAAGTCCCCAGCATCTTCACAAAGCAAACATTAAGCTTTATCGGTGTGATCTGTGCAACAAGTCTTATTCCATGGCTAAACATTTATGGGGTCATGTAAGCACAACTCATAAAGGCCATCCAATGGTTACATGTAGTTTATGCCAGCGGACTTTTTCATCTGTTTCTAATCTTGAGGACCACAAACGTGTTAAACACAAGGATGAAAGCAATCCTGAGCTTATAAGTGATTCCTCCACAGCCTTTGAAGAAGGTATTCCTGATCTTCTGATAGAAAAGAAACCTGAAGAGGTATCATCAAACAGAAGAAAAAATTCAAAGCCGAGGAAAATTGAAAGAGAACTATCTCAGAACGACTGTTATGTACCATCCGAAAATAATGAAATTCCAATGAAAAATGATTTTGAAAAAACCTCTTCAGAACCAGTTTACTCTTGCCTTTTATGCCATGACAAATTCAGAGAAGCTGATCATTTGAGCCAACATCTTTCTGATTGCCATGGTTATGATGGACCTTTAGACTTCAGTACGTATCGTGATGAAACTGGTGAAGATTATGCCGAGAGTATGATGGAATTAGAAACTGTGTTTTGTTGTGAGATCTGTATTAGGGAATTTAATGATAGAGGTAGCCTATGGCTGCACATGTTATATTCTCATCGCGATGAAGCTTCTAAAGCTTGTGGTGTCTGTTTAAAAATATGTGATGATACTGAAAGTTTGACTCAACATGTAGAATCTGCTCATCCCAGAAGTAAAACTGATCAGAGGCGATATAGCTGCCAAGTCTGTGCTAGACAGCATGATTCCCGTAAAAAGCTAGTTACTCATGCTAAAATTCATAACTTAGTAGATGCTGAAGGAAATCTTGTTGATCCTGAATCAGTTGTTATTCTAAATAGTGATTTTTATCCTGATGGTTTCTCTGGTCCACCACTTGATGACAGTTATATGCATAGTTGTGAGATATGTTTCAAAGTCTTTGAAAATGACACAAAATTATTGAAACATAAAAGAAGTGCCCACCGAGATACCATGGGTTCCTTAAATTCATTAAATTCTGGGGCATATCATTTTTATTTTGCATGTGAGATTTGTGGGCTTTCTCATTTATCACGTTCAGAAAGGTGGCGACATATGGCTTCAACACATGCAGGTGATCTGAGTGTTACATGTGAGGTTCCAGAATGTGGAAAGGTTTTTCCCACCAGTTCCATTAAAAAGGAACATGCAGCTCATCATGCTGCTCAAGGCCAGTATCCGAATACATGTGAAGTTTGTGGAAAAATGTGGAAAACAAGGGTGGAATATTGGAAGCATATGATGGGTGTTCATCCTGACTGCTTACCTTTTATATGTGGAGTATGTCTGAAAGTGTTTTGTAACTTATCGAACTTGGTAGGTCATGTTCGGGAAAAACATTGGCCATTGCTGGGCGGAGATTTTTGTTGTGATATTTGTGGTAGGCCATATTCTAAAGTATCTAAAATGACTAGGCACAGGAAAGTGCATTATGTACCTGGTAATCCACCAGAACTTCAAGCTCTTCTTGAAAATCCCAAGGTTGAAAGTGAACCTCATTTCCTTCAACAAACTTCTACATTGGCCTGTGATTTATGTGATGGTAATACTTTTGAATATGCCAATGTGGAGGAACTTGGTAAACACAGGCAAGAAACACACAATGTAATGCCATGTGATTTATGTACCAAGTATTATGGAAGAACATCGCATTTATGGAAACATGTCAATAAAATTCATAAAGGTCATCCTGATGTTACATGTCCTACTTGCCAGCGTACATCTGCATCAAAATCCCACTTAGCTACCCATATTGCTAAGCATCACCGTAGTGAAGATTTGGTTAGTTCTAAGGGTGAAAAAGAAAGTAATGGTGTACATACTTGTGAAAAATGTTCAAAAGTGTTTAGAAAAGAAACATTAGTAAGAAAACATGTTAAACATTGTAAAGGCCCCAGACCAACACCAATCCCTCTTCCAGCACCAGTTGATGGAGTGTACACATGTGAAAGATGTGACAAATCTTTTAGTCTTAGTAATTTGCTTTATAAGCACATGAAGAGTTCTCATGTAACATTTACTTGTGAACTTTGTGAAACCAAGTGCAATACAAAAACAGAGCTGTATCAACATATTTGTGCTGAACATGCTGATCATCCTGATGTCAAGTGTGGTGTCACTGGTTGTGACAAAATTTTAAGGTGTAAAGCAGACCTTGAGAAGCATCAGAAAGGACATCGTTTAAGTTTTCATCTGCATTACTGCATATTTTGTGCTGAATTAGTTACTAGTAAATATAAGATGAGAAGGCATTTAAAAGCAATCCATGCTAATGAAAGTAAGTATTTATGTGCTATTTGTCTAAAAGCTCTACCTGGTTATAAAGAACTTCAAGCACATGTCCAGGCAACTCATCAAGCTGCATTACAGCGAGCTTTTGCTTGCCATATCTGTGGGAAACCTTGTACAAATAAATCAAAACTAATGGAGCATATTAAGTACCATGGAGCTAATTTCCTTCCTTGCAAAATTTGTTTAAAAATATTTTCGTCTAAAGAAGAACTTGATACTCACATAGATAATCATCCTAGTGATAGTGGTGATGAAGAAGACCAGATAGAAGATGTGGAATTGGATACAAATAGTATAATGGATATTATCGGTGCTCCTAAAACTAATGTAAATGTAAAAATTGAGGAGAAAGAAAATGAAAAACGAAAAGCAAAGTCAGAAAGTGAAAATGCCAAACCAAAAAAGAAAACCAAACTTGAAATACTTTGCACTATTTGTTCTGACATTTTTACTTCCAATTTAGATTTAAAGAAACATATGAGAGATGCACATAAAAATAAAAAAACTGATGACACACCAGAGAACTCTGCTCTGTGGGAAAATAATGATGCTGGTCGTACTAATAATGAAAAGAAAACTGAATGGGAAACAACTACTAATTCGGATAAAAGTTTCATGCATCAGCTTGGTCTCATGCCTGAAGCAGAAAAAGCTAAATTAAAAACTGTTAGGAAGGTATATACTGATGATTTTACACCCAGTGAATGTGAATTGTGTGGCAAAGTTTGGCCGGCCAAACGCCATCTTTGGCAACATTTAATCAGATTTCATAAGCCAGAAGCAGGTAGGACTTGCGGTGTTTGTTTGAAACTGTGTCCTGATTTTCCTTGTTTGAGTGCTCATTTGGCGATAGAACATCCTACTAATTTTGATGGTGAAGCAACTAATGTGTCCTGTCGTGTTTGTGGTAAGTATCATGGTGCTAGATCAAAGTTATTAAGTCATGCTAGCATACATGTAGGACATGAAGAAAGAGCTACAGATGATGTACATCATTGTCTTATTTGTAAGGATACTTTCGTCGAATTTTCCCAATTTTGTGATCATATTAGAAAAGATCATAAAATTGATGAAGGTGAAGGTAAATATTCTGTAAATGAACCTGAAACCTCTGTTGATAAAGCTGTCGAGTCAAGTTCTGTAAATGGTAGTGAACATTCAAAATTACCTTTTCATTCATGTGAAGTATGCTCTTTAGTTTTTGCCAGTGAAATTGGATTGACGAATCACAGAAGAATTCATGAGCATTCTGATCATTTCAAGTGTGGACAATGTGGTGAAGTTTTTGTATCTGCTGAAAATCTTTGTACCCACAAACTACAAAAACACAAAGGTACTGAGTTTGTTTGTGCTGATTGTAAATCAAATTTTTCTACTTATAACCAACTAACTGAACATAATAAGCAATGTAAAATGAAACTGAAAAATATGGGTGATACTAATTCCGATGATGATGATCTTCTCCTGGATGATGATATAGAAGAATTAGAAACATCATATGGTGCTAATGACACTCATATGTCCTCTGAATCGGATGTTGACAAATCAGAACTTTTAGATGAAACAGATGATAAGTCAGAAGTATTAAATGAAAATGATATAGAGTCAGAGGAATCTATTAGCGAAGAAGAAGAAAAATCAAACATGTCTGATACTTCATCACATAAAGAACCTAAAGCTGTTGAAGCATTCTTAGGTGGTACAAATGTTGAAGTAGTTCAGATTGATCTTTCTGATGATAACTCTAATTCAAAAGTAAATGAAAACTAA
- Protein Sequence
- MNNPTLQNYEELCRLCASYDAIKIPIFSERGRERNLKDKITTCLPFDVSEDDLLPKSLCYRCIYNLENFYDFRRGCIDARTRLENVIKEVMKHEPKEEGTCVKIEDIKERNVDNGHQIEDDLIESDGEGDCPNPADFLEACLGESPHNPKPVDEEEGSYPCRICDRQFNSKSSLTIHLKFHQDSLGQENDKENYACYVCEKVFSSKGHLALHSKVHIGETSSPAVSNSSRSSPQHLHKANIKLYRCDLCNKSYSMAKHLWGHVSTTHKGHPMVTCSLCQRTFSSVSNLEDHKRVKHKDESNPELISDSSTAFEEGIPDLLIEKKPEEVSSNRRKNSKPRKIERELSQNDCYVPSENNEIPMKNDFEKTSSEPVYSCLLCHDKFREADHLSQHLSDCHGYDGPLDFSTYRDETGEDYAESMMELETVFCCEICIREFNDRGSLWLHMLYSHRDEASKACGVCLKICDDTESLTQHVESAHPRSKTDQRRYSCQVCARQHDSRKKLVTHAKIHNLVDAEGNLVDPESVVILNSDFYPDGFSGPPLDDSYMHSCEICFKVFENDTKLLKHKRSAHRDTMGSLNSLNSGAYHFYFACEICGLSHLSRSERWRHMASTHAGDLSVTCEVPECGKVFPTSSIKKEHAAHHAAQGQYPNTCEVCGKMWKTRVEYWKHMMGVHPDCLPFICGVCLKVFCNLSNLVGHVREKHWPLLGGDFCCDICGRPYSKVSKMTRHRKVHYVPGNPPELQALLENPKVESEPHFLQQTSTLACDLCDGNTFEYANVEELGKHRQETHNVMPCDLCTKYYGRTSHLWKHVNKIHKGHPDVTCPTCQRTSASKSHLATHIAKHHRSEDLVSSKGEKESNGVHTCEKCSKVFRKETLVRKHVKHCKGPRPTPIPLPAPVDGVYTCERCDKSFSLSNLLYKHMKSSHVTFTCELCETKCNTKTELYQHICAEHADHPDVKCGVTGCDKILRCKADLEKHQKGHRLSFHLHYCIFCAELVTSKYKMRRHLKAIHANESKYLCAICLKALPGYKELQAHVQATHQAALQRAFACHICGKPCTNKSKLMEHIKYHGANFLPCKICLKIFSSKEELDTHIDNHPSDSGDEEDQIEDVELDTNSIMDIIGAPKTNVNVKIEEKENEKRKAKSESENAKPKKKTKLEILCTICSDIFTSNLDLKKHMRDAHKNKKTDDTPENSALWENNDAGRTNNEKKTEWETTTNSDKSFMHQLGLMPEAEKAKLKTVRKVYTDDFTPSECELCGKVWPAKRHLWQHLIRFHKPEAGRTCGVCLKLCPDFPCLSAHLAIEHPTNFDGEATNVSCRVCGKYHGARSKLLSHASIHVGHEERATDDVHHCLICKDTFVEFSQFCDHIRKDHKIDEGEGKYSVNEPETSVDKAVESSSVNGSEHSKLPFHSCEVCSLVFASEIGLTNHRRIHEHSDHFKCGQCGEVFVSAENLCTHKLQKHKGTEFVCADCKSNFSTYNQLTEHNKQCKMKLKNMGDTNSDDDDLLLDDDIEELETSYGANDTHMSSESDVDKSELLDETDDKSEVLNENDIESEESISEEEEKSNMSDTSSHKEPKAVEAFLGGTNVEVVQIDLSDDNSNSKVNEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00165384;
- 90% Identity
- iTF_00764013;
- 80% Identity
- -