Rneb043836.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- -
- Assembly
- GCA_948150685.1
- Location
- OX411312.1:82700893-82704794[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-09 3.4e-06 28.0 0.3 159 214 154 218 127 219 0.81
Sequence Information
- Coding Sequence
- ATGGTTCAGAGGCCACAGAGCGAATTAGTTGTAGAGGTTAAGGCAGCCGGTCGCTCCTACATTCCAGCTTACTGCGAAAGTCTTGTTGCAAGGCGGCTAAAGCAAAAGATGGAAGGGAATATCCTGATCGAACCAGCGGCCTTGCCAAAACCTGGAGTTAGAGTGGCCCGTAGCGTTCACAGACCCACTAGCCGGAGAGTGTGGGTGCAATTGGTAAATCTAACCGCAGAGAAAGTATTGGTTCAAAAGGGACAGTGTCTGGGGTATGCCGTAGAGGTGTCTACGAGTAACGTGGAAGAGTCCAACCATGGTCAAACAGTGGGTGCGCTTACGGAAGGTATATTGGCCGAGGAAATAGCAGACCAATGCTGGGGCAGGTTGTCTCACCTTTCTGAACTGGATCGCTCGAGAGTCATggaagtactgatgaaccatattcaggtgttcgaggagcctggtcggcaggACCTCCAGTTGGTGATGGCTGCCCTAGAAGAGCGAGACAGGCTCATTCAAGAGCAAGGTCTAGTGATCGTGGGAGGTGATGGTTCGTCTTCTGATGTCTCTTCAGAGGAGGAGTCTGATGATAAGTCTAACAAGAGAAGAGAAGAAAAGCGAGCGCTCGTCTCTATCGAAGGTGCCGACCTCCTGGAACTCTAG
- Protein Sequence
- MVQRPQSELVVEVKAAGRSYIPAYCESLVARRLKQKMEGNILIEPAALPKPGVRVARSVHRPTSRRVWVQLVNLTAEKVLVQKGQCLGYAVEVSTSNVEESNHGQTVGALTEGILAEEIADQCWGRLSHLSELDRSRVMEVLMNHIQVFEEPGRQDLQLVMAALEERDRLIQEQGLVIVGGDGSSSDVSSEEESDDKSNKRREEKRALVSIEGADLLEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01298377;
- 90% Identity
- -
- 80% Identity
- -