Rneb000135.1
Basic Information
- Insect
- Rhaphigaster nebulosa
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_948150685.1
- Location
- OX411308.1:3057273-3062890[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-24 1.7e-20 74.9 9.8 1 89 11 95 11 100 0.89
Sequence Information
- Coding Sequence
- ATGCGAGAAGAAACCAGTACAAACTTTTCTGCTGAGTCGCGGCTGGCTGCGAAGAGGCAGGCCCGGGCGGAGGCGAGGGAGATCCGGATGCGGGAGATCGAGCGGCAGCAGAAGGAGCAGGATGAAGCGAGGCAATCCTCCACCCCCCTCTACGAGATAGATGGCCTAAGAGGCGGGAGACTTAACAGCAGTAGTGGTCGCCTATCAGCATCAAATAGTTACCATTCGTCAAGGAGAAGTTCCGAGGACTCTCTTGAGGAAACGTCCTCCATCGGCCACATAAGATGGTTTTCAAGCATGTCACCAGGTCCAAAATTGCAAAAAATTCACAGTTCGTTTCTTCCACCATCATTTAGTCATTCATTGTTTTATTTGGCTGTAACTGATAGTTAA
- Protein Sequence
- MREETSTNFSAESRLAAKRQARAEAREIRMREIERQQKEQDEARQSSTPLYEIDGLRGGRLNSSSGRLSASNSYHSSRRSSEDSLEETSSIGHIRWFSSMSPGPKLQKIHSSFLPPSFSHSLFYLAVTDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -