Basic Information

Gene Symbol
-
Assembly
GCA_963920725.1
Location
OY987259.1:31400195-31403682[+]

Transcription Factor Domain

TF Family
zf-LITAF-like
Domain
zf-LITAF-like domain
PFAM
PF10601
TF Group
Zinc-Coordinating Group
Description
Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.2e-09 9.9e-06 26.7 8.5 2 39 69 106 68 112 0.83
2 2 3.3e-09 6.2e-06 27.3 7.0 3 69 113 183 111 184 0.88

Sequence Information

Coding Sequence
atGGCAAATACAGGACCATATAATCAACCACCACAATATGGTGGTTATCCAAATATACCGCCAGCAGGATATCCATATCCTCCGCAAACAGGTTATCCACATCCGCCACCTCATCATCAAGTAGGTTTTCAACAACCACAACCTCAAGTTATTGTAATGCAACCGCAAATTCAACAACAATTTACGGGGCCTCTTCTAGGTCCAGATCCGATTCAGACCCAATGCCGTTCatgtaatacatttattttaacaaatattaaatacgtACCATCTAGAGATACACATTTATGTGCATTGTGTCTATGCTGTTGTATATATTTTGCTGTGGGTCCTACAAATCGGTATATAAAATGTCCATTATGTGGTGTCAGCAATGAAACTTATAATCTTTCACCAATGAATGCAAAAGATAaagtttttggaattttaagttgtttttcaatTTGTATACCAATATGCTGGATACCATTTGGTTTACTATGTATTTCGGCTTGGACTAGGCGAAAACGTCAATTTTGTGCAAATTGTGGTGCACAGATGGGATATCATTTTCGACCATCTTAA
Protein Sequence
MANTGPYNQPPQYGGYPNIPPAGYPYPPQTGYPHPPPHHQVGFQQPQPQVIVMQPQIQQQFTGPLLGPDPIQTQCRSCNTFILTNIKYVPSRDTHLCALCLCCCIYFAVGPTNRYIKCPLCGVSNETYNLSPMNAKDKVFGILSCFSICIPICWIPFGLLCISAWTRRKRQFCANCGAQMGYHFRPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-