Rlae033498.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:40405116-40406011[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.052 3.3e+02 2.6 0.0 24 45 42 63 37 70 0.85 2 4 0.0025 16 6.8 0.1 23 47 69 93 65 100 0.86 3 4 5.5e-05 0.35 12.1 0.1 21 48 95 121 91 123 0.88 4 4 0.0019 12 7.1 0.3 21 52 123 154 120 156 0.90
Sequence Information
- Coding Sequence
- ATGTCAATGAGTCCCGATTTGAAAGCTATGTATACATGTCGACGATGTAaagaaACTTTCGAAACAAAACGTGAACATCTATTACACAGAAAAACTATACATGATTGTAATcctgaagaaaataaatattcctgTGAGATTTGTGGTAAAACATTTGCGAATCATGGTAATATGTATCGGCATTTGAATGGTCATAATAATATACGACCTCATACATGTAAAAATTGTGGTAAATCCTTTGCACAAGCAGCAAATCTACTGCGTCATTTTTCTGTACATAATGGTGATCGTCCATTTGTttgtaatatatgtaataaaggTTTTACACAACAAGGAAATTTACGACGACATGAATTGACACATACCGGTGAGAAACCATTTCGATGTAAACGTTGTGGCCGAATGTTCTCGCAacgtgttaatttaaaaaaacatataatgtTACATCAAGGATTTAAACCatgtacaaaatcaattttacaaacatataagaaaaattcaaatcaaaatgataataataaattaaattcaattattattgatgatCATCATAACAGTATTGGTATTACTGtaacaaattcaataattttagacAGTCATATAGTTAATAAGGATGATCAATTAGAAAATGAAttaatgTATGAATGTGGTTTATGCAGAATGGTATTTAATCATTTCGATGATTTTCAATCAcatgaaatattttgtgaagTAGCTGGTGAAGAACAAATTGTCGAAACAACAAATGTATCGTAA
- Protein Sequence
- MSMSPDLKAMYTCRRCKETFETKREHLLHRKTIHDCNPEENKYSCEICGKTFANHGNMYRHLNGHNNIRPHTCKNCGKSFAQAANLLRHFSVHNGDRPFVCNICNKGFTQQGNLRRHELTHTGEKPFRCKRCGRMFSQRVNLKKHIMLHQGFKPCTKSILQTYKKNSNQNDNNKLNSIIIDDHHNSIGITVTNSIILDSHIVNKDDQLENELMYECGLCRMVFNHFDDFQSHEIFCEVAGEEQIVETTNVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297846;
- 90% Identity
- iTF_01297846;
- 80% Identity
- iTF_01297846;