Rlae001589.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- Aef1
- Assembly
- GCA_963920725.1
- Location
- OY987255.1:14362928-14365511[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.04 2.6e+02 2.9 0.1 22 48 195 221 192 225 0.85 2 4 1.5e-05 0.094 13.9 0.1 21 52 222 253 220 254 0.88 3 4 0.013 84 4.5 0.0 21 51 250 280 248 281 0.87 4 4 0.00035 2.2 9.5 0.1 21 47 278 304 276 309 0.89
Sequence Information
- Coding Sequence
- ATGCACGGCGAAAAGTACAGAATTCTGCAAGTTGTTCTTCAAGGTAAAATTAATGGAGTCAAAAGTCAGTGCAGAAGAAAAACATCTTGGATGAAGAATTTGTCAGAGTGGTTAAATTTGCCAGCAGTTGAAATCATACGAAGATCGCGTGATAAAGATGAAATACATTTAATGATGGCCAACATCCAGAGGGGATTGGAACTgcaagaagaagaagaaaattgttttattcgacccaaatgtaattataatagtGACATCAAATATAAATGCTCAGCCGCAGACAGTCGTGGTACGAAAAATGATGGTAATCGATCACATATTCAAATTCCTGTATCTCGAACAATACCAACAACAGCAACACCCCGTTCAATAATATCAacagtaattaataataataatttattaaatgcttCTGTTGCTGCAACATCAACATCTATACAACAACAATcaactacaaatattaataataataattcctctttaaatgataatattacaaataatactgTACAAATGCCGACTGAAATGATTATAAATAGTAGAACGGCAAGAACATCAAATGGTGGCGGTGGTACATTAGATAAACCATTTCAATGTAATGTTTGTGAAAGAAAATTTCGACAATTGAGTACATTAACAAATCATGTTAAAATACATACCGGTGAAAAACCATATAAATGTTCAATATGTGAAAAATGCTTCAGACAGTCAAGTACTTtaacaaatcatttaaaaattcatactgGTGAGAAACCATTTGGTTGTACGTACTGTGGTAAAcaatttcgACAATTGAGCACCTTAactaatcatttaaaaattcatactgGTGAAAAACCATTTGAATGTGCTGTTTGTAAAAAACAATTTCGCCAATCGAGCActttaaataatcatataaaaattcatgttATGGATAAACTTTATATACCATTTGAGATTAAAGAAGAAGAGGAAGgctga
- Protein Sequence
- MHGEKYRILQVVLQGKINGVKSQCRRKTSWMKNLSEWLNLPAVEIIRRSRDKDEIHLMMANIQRGLELQEEEENCFIRPKCNYNSDIKYKCSAADSRGTKNDGNRSHIQIPVSRTIPTTATPRSIISTVINNNNLLNASVAATSTSIQQQSTTNINNNNSSLNDNITNNTVQMPTEMIINSRTARTSNGGGGTLDKPFQCNVCERKFRQLSTLTNHVKIHTGEKPYKCSICEKCFRQSSTLTNHLKIHTGEKPFGCTYCGKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKLYIPFEIKEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01297880;
- 90% Identity
- iTF_01297880;
- 80% Identity
- iTF_01297880;