Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987256.1:1291816-1295870[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 8.9e-05 0.01 17.3 0.8 1 23 172 194 172 194 0.97

2 15 0.00033 0.038 15.5 0.4 1 23 200 222 200 222 0.97

3 15 0.0018 0.2 13.2 0.1 1 23 325 347 325 347 0.98

4 15 0.12 14 7.4 2.4 1 23 353 375 353 376 0.95

5 15 1e-05 0.0012 20.2 3.8 1 23 407 429 407 429 0.98

6 15 0.021 2.4 9.8 0.2 1 23 450 472 450 472 0.94

7 15 0.43 50 5.7 0.2 1 23 478 501 478 501 0.87

8 15 0.38 45 5.8 0.4 5 19 512 526 509 527 0.91

9 15 0.00012 0.014 16.8 5.9 1 23 536 558 536 558 0.96

10 15 0.022 2.5 9.7 1.6 2 23 564 585 563 585 0.96

11 15 1.1e-05 0.0012 20.2 1.0 1 23 593 615 593 615 0.98

12 15 0.0012 0.14 13.7 0.1 3 23 623 643 621 643 0.97

13 15 0.00017 0.02 16.4 0.9 1 23 649 671 649 672 0.95

14 15 7.3 8.5e+02 1.8 0.6 1 23 682 704 682 704 0.92

15 15 0.016 1.8 10.2 0.0 1 20 1161 1180 1161 1183 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	8.9e-05	0.01	17.3	0.8	1	23	172	194	172	194	0.97
2	15	0.00033	0.038	15.5	0.4	1	23	200	222	200	222	0.97
3	15	0.0018	0.2	13.2	0.1	1	23	325	347	325	347	0.98
4	15	0.12	14	7.4	2.4	1	23	353	375	353	376	0.95
5	15	1e-05	0.0012	20.2	3.8	1	23	407	429	407	429	0.98
6	15	0.021	2.4	9.8	0.2	1	23	450	472	450	472	0.94
7	15	0.43	50	5.7	0.2	1	23	478	501	478	501	0.87
8	15	0.38	45	5.8	0.4	5	19	512	526	509	527	0.91
9	15	0.00012	0.014	16.8	5.9	1	23	536	558	536	558	0.96
10	15	0.022	2.5	9.7	1.6	2	23	564	585	563	585	0.96
11	15	1.1e-05	0.0012	20.2	1.0	1	23	593	615	593	615	0.98
12	15	0.0012	0.14	13.7	0.1	3	23	623	643	621	643	0.97
13	15	0.00017	0.02	16.4	0.9	1	23	649	671	649	672	0.95
14	15	7.3	8.5e+02	1.8	0.6	1	23	682	704	682	704	0.92
15	15	0.016	1.8	10.2	0.0	1	20	1161	1180	1161	1183	0.93

Sequence Information

Coding Sequence: ATGGAAAATCAAGGTTACGAAATACACTGGGTTCCAGTTGATGGAACAGGTGTAAATCGTGTAGTTACAGCCGATCAAATTATTACAATGGATCCACaaagtgatgatgatgaaaatggtCATCAAAGATATTTAGAAATCTCATCAATACCATCAAACCTTGATCAAATTGCtgctgaaaatttaatttatatggctCAAGATGGTCAAATGGCAGCAATTTGTGACGATGGTAATCATCATATGGCAACAATTTGTGAAGATTTTATTGAAGAAGATCCACAAATTGAAGCAGCTGCGTTAGAGAATCAACAAAATCAATCCTGTGGTGAACAACAGTATTTTGAATGTCAAGTAACCGAAGAAATTATTACAGATGATTGGGTACAGCAACAAGGAGAAgaaagagtgGAAATTCCTGTTGATCAAATTGGATCTGGTGATGTTCAATTCGTTGAAGAATTAGATGTTCCGCTACCAACTGATCAAGATGAATATACAGCATTACGACCATATCCATGTGATTTTTGTAGTCGTAGATTTCGAAAGAAAGTTAGCCTTATGAATCATATGATTGCTCATCAGAATGATCGACCGcatatttgtaatttgtgtGGTGCCCGGTATATACGGCGAGCTGATTtattgaatcatttaaaaatcCACGCTAATATGCCAGAACAacaaattgatgaaattgatgaaaaatacTTGCACTTAAATGATCATATCGATTCGAAACCTTATCGAAACAGTGGTGGTGGTGCTGGTGATCATTATTATCAAGAATGGGATGATAACTatgaaataaaaccaaaatcaaaatccttaaaaaataatcgaaattcTGGAGGACGacagaaaaaaatgaaaatcaaagaagaagaaatttatgaaaatactgATATtggtgaaaatataatttcagaacAAGATGCACAACGTTATCCTATTATAGATCAAAGAAAACCATTTGTTTGCCAACAATGTGGTATTGCATTTGCCCGAGAGAAGGCAATGTTATCACATTCAaggatccatGGCAGTGATTCACCATTTGAATGTGTTAATTGTAATGAAATGTTTTGGGATTTAACAACTTTACATGATCACCAAAAAATACATCATTTTGAAGCTAGTAATTCTGAATATGAACCGGAACATGAAGaagatgaaaatgatgaaaGTGAATCAgaaaatgaatcaaaatatggcgaattttattgtaatatatgtGGTATGTCTTTCCATCGTCAGGATTTATTGAAACGACATTCAAAAActcatattaaaaaagaaatggaTACAAAAGGCAATAGTAGTAGTGATTATTTATCATTGTCGCGTCATTGCTGTAATGTTTGTGGTGAGAATTTTGCCGAAGCATTAGATTTATTAGCACATGCTGAAGTTCATGCAAGATTTCAACCgtttaaGTGCGTTTTATGTGGTGAAACATTTCTTGAAGAAGCaactattaaaaaacatttatcaaatGTTCATGCAAATGAAATGACATCGAATTCATGTATTTTATGTGGGAAGCAGTGTCGTGATCGTAAAGCATTAATTAAACATGCTTGGGATCATTCACGAGAAAAGAATCATTCATGTTCAAAATGTGgaaaaacttttcataataAAGCAAGattaaaacgCCACATGGTTTCTCATCGTAATAAATCAGTAACTTGTGATGTTTGTCATGAAGAATTCCCTGATGGACGATCTTTAATGAATCATCGTCATTCGCATTCAAATTCATCGGGTAAATTATTTCCGTGTCACGAATGCGGCAAAACATTTGGATCGCGTAGTTCACAACAAATTCATGTTCGTATTCATACTGGCGAACGACCGTACGGTTGTCGATATTGTTGGAAAGCATTTGCTGATGGCGGTACATTAAGAAAACATGAAAGAATTCATACTGGTGAAAAACCATATGCTTGTTCAGTTTGTACACGTGCATTTAATCAAAGAGTTGTACTTCGGGAACATATTAGATCACATCATTCAGCTATTGATAATAAACGTGGTACTTATCATTGTACAGTTTGTTCTGATGAAATGTCATCATCTTTAGAATTAATACAACATTTGATACGTCACAGCGATATGAATACAGCAATGCAAAGACAACCAATAACTGGACCACGAAAATATAAACGACGTCGAAAATTAAAACCACATGAATTAGAACGATTGCGTAATGAAAAATCCGATATGGAATTTTCTGATTTAGATACATCAAATACTGATGATATTCTTGGTATAATATCATCACGatctagtaataataaaaataaatcaaattcgtCATCTAATGTTAATCgttcaacatcatcatcacatcAACAAAATCATCATCGTAAtcgtaaatattcaaataatacagATCCTTTATCAGTTGGTAATAATAGTTGGccatcaaaattaatatcatcatcaacaacaaatgATGATTCATATAATGTagttttttcaaatttagataatgatatacaaaatattgaaccATTAGTTGTTGgtaatacaaataattctaataataattatacaattggtacaaaaaattctattaataataatacaacatCAATAACGACTTCGGGTGTAGGTATcactaaattacaaaaaaatactaataaaaatagttcAGGTGGTAATAAacgtaatagtaataaaaatgatgaaaaatcatCAAGACCAAAAATGATACATACACAAAAGACACGTGTCCCAGTTGAAGATGGTAAACGTAAAACAAGAACAATGATTACACGCACTGAACAAATAAATACGGAACGTAATAGTAATAatcgacaaaataattttgttaataataataataatgattatgaaATTACCgatattttagtaaaatctaTACAAAACTATAGTCCAATACGTATTAAACAAGAAACAAGTCAAAGTGATTTATATGATgcacaattattattagaagCAGCAGCAACCCGTAAcgaatttgataaatataatccAAGTGTTGTTAATGATTTAGAAGAGATATTACGATCAccagaaaaatcaaaaacaccACCGCCAAAAGTTAAAGACGAACAACAATTACAATATATTACATCAACACCAACATCATCTTCAATTTCAATTACCGATGATGATGTACGTAGATCAACACGTGCTCGCCGATCTATACCAAatcgtaaatatttagaatttgaaACATCAACATCATACAGTAATAATCGATCACCAACTGTTAAACCGACAACAACACAACGTAAcaaatccaataaaaatattgaaaagaatattataattgatgATATTAAAATGATACAAAATCAACCAATAAGTATTATAAATCAAGAATGCTcatcaacaattaaaattattcatatgaataataataatattattaataataattcatctgTAACAACACAATCAGAATCACCTATTATTATTGTACccgaaattaaaaaacaaaaatattttgaatgtgaAATGTGTTCAGCTATATTTACAGATCGGGCACAACTTTTAGATCATGTACCAATTcacatatga
Protein Sequence: MENQGYEIHWVPVDGTGVNRVVTADQIITMDPQSDDDENGHQRYLEISSIPSNLDQIAAENLIYMAQDGQMAAICDDGNHHMATICEDFIEEDPQIEAAALENQQNQSCGEQQYFECQVTEEIITDDWVQQQGEERVEIPVDQIGSGDVQFVEELDVPLPTDQDEYTALRPYPCDFCSRRFRKKVSLMNHMIAHQNDRPHICNLCGARYIRRADLLNHLKIHANMPEQQIDEIDEKYLHLNDHIDSKPYRNSGGGAGDHYYQEWDDNYEIKPKSKSLKNNRNSGGRQKKMKIKEEEIYENTDIGENIISEQDAQRYPIIDQRKPFVCQQCGIAFAREKAMLSHSRIHGSDSPFECVNCNEMFWDLTTLHDHQKIHHFEASNSEYEPEHEEDENDESESENESKYGEFYCNICGMSFHRQDLLKRHSKTHIKKEMDTKGNSSSDYLSLSRHCCNVCGENFAEALDLLAHAEVHARFQPFKCVLCGETFLEEATIKKHLSNVHANEMTSNSCILCGKQCRDRKALIKHAWDHSREKNHSCSKCGKTFHNKARLKRHMVSHRNKSVTCDVCHEEFPDGRSLMNHRHSHSNSSGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCTRAFNQRVVLREHIRSHHSAIDNKRGTYHCTVCSDEMSSSLELIQHLIRHSDMNTAMQRQPITGPRKYKRRRKLKPHELERLRNEKSDMEFSDLDTSNTDDILGIISSRSSNNKNKSNSSSNVNRSTSSSHQQNHHRNRKYSNNTDPLSVGNNSWPSKLISSSTTNDDSYNVVFSNLDNDIQNIEPLVVGNTNNSNNNYTIGTKNSINNNTTSITTSGVGITKLQKNTNKNSSGGNKRNSNKNDEKSSRPKMIHTQKTRVPVEDGKRKTRTMITRTEQINTERNSNNRQNNFVNNNNNDYEITDILVKSIQNYSPIRIKQETSQSDLYDAQLLLEAAATRNEFDKYNPSVVNDLEEILRSPEKSKTPPPKVKDEQQLQYITSTPTSSSISITDDDVRRSTRARRSIPNRKYLEFETSTSYSNNRSPTVKPTTTQRNKSNKNIEKNIIIDDIKMIQNQPISIINQECSSTIKIIHMNNNNIINNNSSVTTQSESPIIIVPEIKKQKYFECEMCSAIFTDRAQLLDHVPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644409;
90% Identity: -
80% Identity: -