Rlae001807.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhamphomyia laevipes
Gene Symbol
-
Assembly
GCA_963920725.1
Location
OY987255.1:18844016-18849753[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 9 1e+03 1.5 0.6 1 10 70 79 70 90 0.84
2 19 8.9e-05 0.01 17.3 1.7 1 22 226 247 226 247 0.95
3 19 3.9 4.5e+02 2.7 0.1 2 12 279 289 278 292 0.83
4 19 1.1e-05 0.0013 20.1 2.8 2 23 296 317 295 317 0.97
5 19 0.00076 0.088 14.3 0.3 2 23 340 361 339 361 0.97
6 19 0.0054 0.63 11.7 1.6 1 19 415 433 415 436 0.94
7 19 0.00078 0.09 14.3 3.5 1 22 443 464 443 464 0.95
8 19 7.6e-06 0.00089 20.6 2.9 1 23 543 565 543 565 0.98
9 19 2.1e-05 0.0024 19.2 0.7 2 23 592 613 591 613 0.96
10 19 0.7 81 5.0 4.1 1 23 619 642 619 642 0.95
11 19 0.033 3.8 9.2 0.5 1 23 656 679 656 679 0.95
12 19 0.0076 0.89 11.2 0.7 1 23 734 756 734 756 0.99
13 19 0.0059 0.69 11.5 1.9 1 23 762 785 762 785 0.95
14 19 0.0018 0.2 13.2 1.2 1 23 794 817 794 817 0.96
15 19 0.11 12 7.6 3.3 1 23 823 846 823 846 0.93
16 19 2.3e-05 0.0026 19.1 5.8 1 23 875 897 875 898 0.96
17 19 0.19 22 6.8 2.7 1 23 904 927 904 927 0.88
18 19 0.00033 0.038 15.5 1.2 1 23 984 1006 984 1006 0.95
19 19 2.6e-06 0.0003 22.1 3.9 1 23 1010 1032 1010 1032 0.99

Sequence Information

Coding Sequence
ATGGAAGAAAAAGTGTATAATGAAATGTccacaataataaatacaaataattctaatgataatattaataatattccattgataataaataataatgttaaacgtgaaattgatattgattttgaaGATGAAAGATTGGATATCAAAGATGAAAATTACCATTCTAAATGTGGTGAAATATTTGTATCTAAAGAtaaagaatttacattttattgcaGTATTTGTAatgagaattttttaaattttcaatttttctctGAACATGTTTTGTATGATCAGAATcatgaaaatcaattaatatttttgaataattatactACAAATAATGtcaatagtaattttattataccatCACTACTGCCTTCATCATCAGTTACACTTGCAAATAATCCATTCAAAGATCCATATCCAGACTGTCAAAGTATTGTAAAAACTGAATTCACAATTGATGATGAATTATGTGAAgaaaattcatcaaataattttgcTGCTGATGAAGTGCTGGAAGTAATATCAGAACCACCAGCTGGATTTTATCAACATAATGACTACAATGAACAAACTGATTTTTCAGAATTAACTGAAGAGCCAATAATATTAGCTAATTTACGTGAAGAGATTATGCAAGAAGAATTTTCGAATATTTCAACaggaaGCAACAATTATGCTGGTTTTCATAAATGTAACTTTTGTAAAAAAGAATTTTCCCGAGCatggaatttaaatattcatttaaaacgatgtaaattaaatatcgataaaattgaatatcaacCACCACAACCACAACCATACAAATCAGATTCAATAGCAGCAACTAGtgctattaaaattatgtgtcCAATTTGTAAAATGTCATTTCAacAAACTGAAGAAAATCTTTTACGATGTGATCTATGTAATACATCGTTTAAACGTCGGGAATATTTACGTAAACATATTAAACGACATATGGCGAAACATCGAAAACAACAACCACCATTTTTACCTAATCCtatacaaacaaattataaattagaatgtaatatatgtaatttaaaatttgatgaagAATATCAATTATTTGCACATCAAAGTACACATTTATATACAGATTCTTCAGTGGAAATAAATGAATTGGATACGAAATTTACATCAGATATAGTAACTAGTACACCAActtttgatgataataatgaaaattcaaaaattccatttgttgatgatgatgatgattcatcatttaaagaaattaatgaacAATTCAGATGTAATAATTGCGATCGAACATATAACAGTGAAGAATCACTAAAAATGCATAATTGTATTGATATATTTGATAGGCCACATCAATGTTTATCATGTAATAGAAGTTTTATGTATCAATCTTATTTAAAAAGGCACATGAAAAGATGTTCAATGAGAAATTTCATTAACGAAatggataataaaaatgattttgataaattttatagtaaatatgatgatgataatgaagataatgaatatgaagaaaaatCTCTAGAAAATATTTCTCATTCAATTTCTTCAACAAATGAACAATTAACAATTACACCAACTAAATCAACAGGAATAATAAATTCACCATCTAAACGTAAGGGATgtggtaatttattattaaagttatttaaatgtaaattttgtaaaaaagtctttagatctaaaattaatttacaaaatcatttaagtATTCATTTAAAAAGCCAAAATCCAagtattattaatgataatatgacaacaacaaataaaatacaattgacACCGCCAtcattgaaatgtaaaatttgtggCCGTAGATTTAAacagaaaatttcattaatgatACATGAACGTGGCCATACCGATGATAAACCATATGAATGTAATTTATGTCATTCGAAATTTTATACAcaaggatatttaaattttcataaaaaaagtatacataaaatatattcaattggTAATAGTGGTAATTGTAAATCATTTAATTGTGGATTgtgtaatatgaaatttttaacaaggtcacttttaaatattcatctaaATAATGAACATCAAAATGACAACATTAAAGATCATTCACTTGAACAATCAGAACAATCTATGTTGTCATCTAAATATGCTaatgaattaaacaaaaatgtcGAACAAAATTCACCATCAATGTCATATGGAAATGAAGTAATTcccttaaataaatcaattagtaGAACGAAATATAAATGTCGATTTTGTCCGAAACTAATAAATCGccgaacaaatttaataatacatgaACGTATTCATCTTGGTCAACGTCCACATTCGTGTGATATATGTAAGAAAACATTTCCATCAATTAGTTATGTTAAATTACATAAGAAAAATGCCCATAATATTACTGTACCACGAATTCAATATGaatgtaaatattgtaataaaattaccaCAACTGAATATTTCCTAACATTACATGTTAATAATTTACACCGTGAAGAATGTCCACATGAatgtaataattgtttaaaaagatttgaaactgttgatgatttaaatatacattgTAAAACTGAACATACAGCATTAAATAATGGTTccgaaaataaagaaatttctacaattgaaatatcaaatgaaaatccAGAAAATActgagaatatttttaaatgtaattattgtacgaaaagttttaataatttatataaattgaatatacatCAACGAAATCATCATATTGGTGAAACAccatattattgtaatttatgtgataaaaatttctCATGTGCACCATATTTATGGAAACATAATCAATTTTGGCATAAAGAAAAAACCacaacaactacaacaacatcaacatcatcatcgaattttacaaaaatattacctAATTTGAGTACAAAAAGTTATTTATcacaaaaagatttaataacaCCATCTTCTAATACTTCGAAATCGAAAAATCCAAAagaagattattatttatatatacatgcTTGTGAGATTTGTggtaagaaattcaaaaaaatggcTTATTTAAAAATGCATGTAGCTAAACATACAGATGCCTATAAATGTGAAATTTGTGGTAAACGTTGTTCCAGTTCACACAATTTAAATGTTCACCAACAAATACATGTAaacgataaattaaatttatctaataattctaaaataactGATGACACTACTGAAAATATTACAACTgctacaaaaaatgaaaattctgatAATTTATCGAAAGCCGTTAATTCATGTATTAAGAATAAAATGAGTATAATTGGTGCAtcgaaattttacaatttggatTTTAGAATGTTGTATAAAAATGTGGCAATAAAACGTagagaattaaaagaaaaattcagtGTAAATAATGTACGAGCTCATGTTAGTTccgattcaaaattatttaatcagcAAAAACCACCAGCTATTGTTGCAATTTCACAGgcaaataaatttcttacaaaTCGTAAACGTATTTATAAGAAAAGATCATCAGCAGCTTTAGAAAATTCGAAATTCAGACAAGAAGGTACAAAAGAAAGAGAAGCATTAATTAAAGCTGTTCGATTATATGAAGCTGGTGAATTATCTCAAGCTCAGGTtgcaaaatcttttaatatttctgtagCTTCATTGTGTCGTCATATGAGCACTGTACCACGACTTCGCGAAACTGaagaaattttatcaaatgatttaaataatagtatcgttgaaattaatgatgaaaaaaaatcaataaatattccAACAGATTTAAGTACATGGTATACAGAAAATTCATCAAattcagaaaatgaaaataatgaaatgggTGAAATTATAAAAGCTGAAGAATGTTtagaaagtttaaataaatccaaaaatattgttgatttCCAAGAAATACGAAAAATTTTATCACAACCATCAAAATCACTATCTACAATTaatgttgataataatttgAAGCAATTTAATGAGGAGAATAatgaagaaattgaatttcaaattccATCGAATTATATCAATCCAATAAAAGACATAGACATTGATGATGATTCGAAAATAGATAATCAACATAATAATAGTGTACGGCGACATccaattgaaaaaatatcacaagctgtagaagaatataaaaaaggtGGTGTTTCACAAAGTAAAATTTgtgaaacatataaaatttccctATCAACATTGAAACGTCATttgaaaaaatctaaaaaaactattttccaaCACAGCCATATTTCAATGAATAGATCTAATCAACAAGAACTACAACGACAACCATCAGATAATCAGATGACTattagaaatgaaataaatcagCCTACAGATATTGAAAAttctgataatttaataaaagctGTTAATTCATGTATTAAGAATAAAATGAGTATTATTGGTGCAtcgaaattttacaatttggatTTTAAGATGCTTTATAAAAATGTAGCAATTAAACGtagagaattaatagaaaaagcaaatcaaaataatttattaattgaaaatgaaaatccaatattaaattatgaacaaaaattatttgatagtagtaaattttgtaatatgaaatcatcaccatcatcatctattttattaaattcacaatCACAATCACTACCCCAAGTACCAAGTAAGTTATTATATAATCGtaagagaaaatttaaaaaacgtgTTCCAGTTGCGTTAGGAAATTCGAAATTTCGTCAAGAAGGTACTGCCGAAAGAGCTTCATTATTTAAAGCAGTTCGTTTATATCGAAGTGGTGAAATGTCACAAGTAAAAGCggcaaaattttgtaatatttcctTAGCAACATTATGTCGTCATATGAATAGTATTCCAAAAGGTGAGGaaactaataaatatcaattCGAAGAGAGAATCAATGATATACCACCATTGAATATTgataaagaatataattggtcaaatacttgtaacagaaataattataattttgaaaattttgataatattcaaGCTACTCATGTCAATGAAAATGTACAAGAATATTTTgacaattcaaataatatatcaaataatgatttaaataatattttaaatccacAATCAACTTTTTCTACTTCAAttgaatatgataaaaataatatacaatttccttctaatatacataatacatttcCACCTACTATACATGATACATTTCCTCCTACTATGAATGAATTTGCTGAACATTCTGCATTTTTTTCATCTGATGatcaatttttaacaaaaattgataataaagcTGTTGATTTGCAAAGATgttcaattgaaaaaattgcaaaagctgtagaagaatataaaaaaggtGGTGTTTCACaaagtaaaatttgtaaaatgtatagAATGTCATTGTCAACATTACAGCGTTATTTAAAAGATGAACAACAAAAACCAgtatcaaatttacaaatttataaaccaCCACCAACATTACCAACATCAACAATATCAGCAACaataaatcaagaaaaaaattttaatgatgaaaatttattaaaagctaTATTAGCAGTTCGTAATGATGGACTTAGTCATTTAGATGCAGCTAATGCACATAATGTTTCTGTATCAgcattatatttatcattaataagAAATGAAGATAACCAGTAA
Protein Sequence
MEEKVYNEMSTIINTNNSNDNINNIPLIINNNVKREIDIDFEDERLDIKDENYHSKCGEIFVSKDKEFTFYCSICNENFLNFQFFSEHVLYDQNHENQLIFLNNYTTNNVNSNFIIPSLLPSSSVTLANNPFKDPYPDCQSIVKTEFTIDDELCEENSSNNFAADEVLEVISEPPAGFYQHNDYNEQTDFSELTEEPIILANLREEIMQEEFSNISTGSNNYAGFHKCNFCKKEFSRAWNLNIHLKRCKLNIDKIEYQPPQPQPYKSDSIAATSAIKIMCPICKMSFQQTEENLLRCDLCNTSFKRREYLRKHIKRHMAKHRKQQPPFLPNPIQTNYKLECNICNLKFDEEYQLFAHQSTHLYTDSSVEINELDTKFTSDIVTSTPTFDDNNENSKIPFVDDDDDSSFKEINEQFRCNNCDRTYNSEESLKMHNCIDIFDRPHQCLSCNRSFMYQSYLKRHMKRCSMRNFINEMDNKNDFDKFYSKYDDDNEDNEYEEKSLENISHSISSTNEQLTITPTKSTGIINSPSKRKGCGNLLLKLFKCKFCKKVFRSKINLQNHLSIHLKSQNPSIINDNMTTTNKIQLTPPSLKCKICGRRFKQKISLMIHERGHTDDKPYECNLCHSKFYTQGYLNFHKKSIHKIYSIGNSGNCKSFNCGLCNMKFLTRSLLNIHLNNEHQNDNIKDHSLEQSEQSMLSSKYANELNKNVEQNSPSMSYGNEVIPLNKSISRTKYKCRFCPKLINRRTNLIIHERIHLGQRPHSCDICKKTFPSISYVKLHKKNAHNITVPRIQYECKYCNKITTTEYFLTLHVNNLHREECPHECNNCLKRFETVDDLNIHCKTEHTALNNGSENKEISTIEISNENPENTENIFKCNYCTKSFNNLYKLNIHQRNHHIGETPYYCNLCDKNFSCAPYLWKHNQFWHKEKTTTTTTTSTSSSNFTKILPNLSTKSYLSQKDLITPSSNTSKSKNPKEDYYLYIHACEICGKKFKKMAYLKMHVAKHTDAYKCEICGKRCSSSHNLNVHQQIHVNDKLNLSNNSKITDDTTENITTATKNENSDNLSKAVNSCIKNKMSIIGASKFYNLDFRMLYKNVAIKRRELKEKFSVNNVRAHVSSDSKLFNQQKPPAIVAISQANKFLTNRKRIYKKRSSAALENSKFRQEGTKEREALIKAVRLYEAGELSQAQVAKSFNISVASLCRHMSTVPRLRETEEILSNDLNNSIVEINDEKKSINIPTDLSTWYTENSSNSENENNEMGEIIKAEECLESLNKSKNIVDFQEIRKILSQPSKSLSTINVDNNLKQFNEENNEEIEFQIPSNYINPIKDIDIDDDSKIDNQHNNSVRRHPIEKISQAVEEYKKGGVSQSKICETYKISLSTLKRHLKKSKKTIFQHSHISMNRSNQQELQRQPSDNQMTIRNEINQPTDIENSDNLIKAVNSCIKNKMSIIGASKFYNLDFKMLYKNVAIKRRELIEKANQNNLLIENENPILNYEQKLFDSSKFCNMKSSPSSSILLNSQSQSLPQVPSKLLYNRKRKFKKRVPVALGNSKFRQEGTAERASLFKAVRLYRSGEMSQVKAAKFCNISLATLCRHMNSIPKGEETNKYQFEERINDIPPLNIDKEYNWSNTCNRNNYNFENFDNIQATHVNENVQEYFDNSNNISNNDLNNILNPQSTFSTSIEYDKNNIQFPSNIHNTFPPTIHDTFPPTMNEFAEHSAFFSSDDQFLTKIDNKAVDLQRCSIEKIAKAVEEYKKGGVSQSKICKMYRMSLSTLQRYLKDEQQKPVSNLQIYKPPPTLPTSTISATINQEKNFNDENLLKAILAVRNDGLSHLDAANAHNVSVSALYLSLIRNEDNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01297288;
90% Identity
iTF_01297288;
80% Identity
iTF_01297288;