Basic Information

Insect: Rhamphomyia laevipes
Gene Symbol: -
Assembly: GCA_963920725.1
Location: OY987258.1:38096271-38103197[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.5e-05 0.0052 18.2 2.9 1 23 414 436 414 436 0.98

2 18 0.0017 0.2 13.2 0.3 1 23 442 464 442 464 0.97

3 18 8.2e-05 0.0095 17.4 1.7 1 23 470 492 470 492 0.98

4 18 2.4e-05 0.0028 19.0 3.1 1 23 498 520 498 520 0.97

5 18 0.00028 0.032 15.7 4.9 1 23 526 548 526 548 0.98

6 18 0.0001 0.012 17.1 5.7 1 23 554 576 554 576 0.97

7 18 4.7e-07 5.5e-05 24.4 4.3 1 23 582 604 582 604 0.98

8 18 2.3e-06 0.00027 22.2 3.2 1 23 610 632 610 632 0.97

9 18 0.0001 0.012 17.1 6.7 1 23 638 660 638 660 0.97

10 18 9.4e-05 0.011 17.2 6.4 1 23 666 688 666 688 0.98

11 18 5e-06 0.00058 21.2 4.5 1 23 694 716 694 716 0.98

12 18 6e-05 0.0069 17.8 8.3 1 23 722 744 722 744 0.98

13 18 1.2e-05 0.0014 20.0 8.9 1 23 750 772 750 772 0.98

14 18 1.1e-06 0.00012 23.3 7.7 1 23 778 800 778 800 0.98

15 18 0.00033 0.038 15.5 9.5 1 23 806 829 806 829 0.95

16 18 0.00021 0.024 16.1 0.4 1 23 835 857 835 857 0.97

17 18 0.00087 0.1 14.2 4.3 1 23 867 889 867 889 0.99

18 18 7.8e-06 0.00091 20.6 2.3 1 23 895 918 895 918 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.5e-05	0.0052	18.2	2.9	1	23	414	436	414	436	0.98
2	18	0.0017	0.2	13.2	0.3	1	23	442	464	442	464	0.97
3	18	8.2e-05	0.0095	17.4	1.7	1	23	470	492	470	492	0.98
4	18	2.4e-05	0.0028	19.0	3.1	1	23	498	520	498	520	0.97
5	18	0.00028	0.032	15.7	4.9	1	23	526	548	526	548	0.98
6	18	0.0001	0.012	17.1	5.7	1	23	554	576	554	576	0.97
7	18	4.7e-07	5.5e-05	24.4	4.3	1	23	582	604	582	604	0.98
8	18	2.3e-06	0.00027	22.2	3.2	1	23	610	632	610	632	0.97
9	18	0.0001	0.012	17.1	6.7	1	23	638	660	638	660	0.97
10	18	9.4e-05	0.011	17.2	6.4	1	23	666	688	666	688	0.98
11	18	5e-06	0.00058	21.2	4.5	1	23	694	716	694	716	0.98
12	18	6e-05	0.0069	17.8	8.3	1	23	722	744	722	744	0.98
13	18	1.2e-05	0.0014	20.0	8.9	1	23	750	772	750	772	0.98
14	18	1.1e-06	0.00012	23.3	7.7	1	23	778	800	778	800	0.98
15	18	0.00033	0.038	15.5	9.5	1	23	806	829	806	829	0.95
16	18	0.00021	0.024	16.1	0.4	1	23	835	857	835	857	0.97
17	18	0.00087	0.1	14.2	4.3	1	23	867	889	867	889	0.99
18	18	7.8e-06	0.00091	20.6	2.3	1	23	895	918	895	918	0.97

Sequence Information

Coding Sequence: atgaaTGCTGAACATTCAGTTGAACAGCATTCAGAACATTTGAATGCTGATCATTCCAGTGATTCGCAAAGACAGCAACAAACATCAccacaccaacaacaacaacatcctCCAAATCATCAGCAGCAGCAAATTGAGcATCAACAACATGATAATAGAGTTCTCGGAGGTGTTATTCATCCAGTTAGTGAAGctgaaataaaacaatctttacCACTTCCAAATGCTCCACAAttGGGAAAGTATTGGGTTGTTACAAATTTGTTTCAAGGTCATGGACAAAATACGTACAATTTGTCATCACCACCAACAACATCTTCTGTTCCTACATTACCGCCACCTATATCTTCTACACATACATCAACTGCAACATCTATGCCAAAATCTGAAATTATCAAACAGGAAGATATGCAACAACAACACCGACAACATAACAATTCAAATAATGCACAACTTATAACATCAGTTAGTTCAAGTAGTATTCAAATCCCTAATCCCATGTTATCAAATAGCCAACATCAAATATCTAATGGAACTATGATTACTGCTTCACAAGCCGAACAGTTACAAGTTCAATTAAATTCTGGTAATACTATGATGGTAATGGATACAACATCAAATTCTGCCGGCGGAAaacttgataaaattaatatgatgaatgctcaacaaaatttaaataatgatcaAATGACAATTACAAGAAATATTATACCAACTTCACTTCAACAAACGATTAAACAAGAAAAACCATTTGCTAATGGTAAACCAGTAACAACACATTTACAAATTCAACATCAACAATTGCCACCAGATAGTAAAATGCATGTATCACATTTATTAGATGTAAGAAATCCGGATGGTTCACCAATTAAAATTCAACCATCTGATCAGGAGTTAGGAAAGTCTTTAGGTGTTGAAATGTATAAGGTTAATATTGAAGATTTAAGTCAGTTTTTATCATATCATGAGGTATTTGGTAAACTTCATAGTGGTGATGTTATAACAACACATCCAGTTTCACATACAACAACCCAACAACAAACAAATGTAAGTAATAATACAATTACAGTAACAGCTAATACAAATACCATTGTTGGTGGAACaactaatattacaaattctacTGCTGATTTGATAATgccaaaaatggaaaatataaatcaaatatctGGTATAAATAATACTGCAGTAAATCCCCATTTAATTGGTGATGCAGCAGGAACTATACCACCAGCTAATCATACCTGTGATATATGTGgaaaaatgtttcaatttcGATATCAGTTAATTGTACATCGGCGTTATCATAGCGAACGTAAACCATTTAATTGTCAAGTATGTGGTCAAGGTTTTCAAACATCTTTAGATTTAACAACTCATGGTAAAATTCATATTGGCGGACCAATGTTTACGTGTACAGTATGTTTTCATGTATTTGCTAATGATGCCAGTCTTGAAAGGCACATGAAAAGGCATTCAACTGATAAACCTTTTGCTTGTACAATATGTCAAAAGACATTTGCTCGAAAAGAACATTTGGATAATCATTTTAGAAGTCATACTGGTGAAACACCATTCCGTTGTCAATTTTGTGCAAAAACTTTTACACGTAAGGAACATATGGTTAATCATGTTCGAAAGCATACTGGTGAAACTCCGCATAGATGCGATATTTGTAAGAAATCGTTTACTAGAAAGGAACATTATGTTAATCATTATATGTGGCATACtggtGAAACTCCTCATCAATGTGAAGTTTGTGGTAAAAAATACACCCGAAAAGAACATTTAGCTAATCATATGCGATCACATACAAACGATACACCTTTTCGGTGTGAAATTTGTTCAAAGAGCTTCAGTAGAAAGGAACATTTCACTAATCATATACTATGGCATACaggAGAGACACCACACAGATGTGATTTTTGTTCAAAGACATTTACAAGAAAAGAACATCTTTTAAATCATGTTCGTCAACATACAGGTGAATCTCCACATCGATGCACTTACTGTCTCAAAACTTTTACTCGAAAAGAGCATTTGGTAAATCATGTACGTCAACATACCGGCGAAACACCATTCAAATGCACTTATTGTACTAAAGCATTTACTAGAAAAGATCATATGGTTAATCATATAAGACAGCATACTGGTGAATCGCCACATAAATGTACATTTTGTACAAAAACATTTACAAGAAAAGAACATCTTACAAATCATGTTCGTCAACATACTGGCGAGTCTCCACATAAATGTACATACTGTAAAAAGACATTTACCAGAAAAGAACATCTAACAAATCATACACGTTTGCATACTGGTGATTCACCGCACAAATGTGAATATTGTCAGAAAACTTTTACACGTAAAGAACATTTGAATAATCATATGCGACAGCATTCTAGCGATAATCCGCACTGTTGTAATGTTTGTAACAAACCATTTACTAGAAAAGAACATCTTATAAATCATATGTCACGGTGTCATACCGGTGATCGTCCTTATGCATGTGAGACATGTGGAAAATCATTTCCACTTaagggaaatttattatttcatcagAGGAGTCATACTAAAGGTCAACCGCAAGAGCGTccatttaaatgtgaaaaatgtCCTAAGGACTTTATTTGTAAaggtcATTTGGTATCACATATGAGATCACATTCTGGTGAAAAGCCACACAGTTGTACATTGTGTAGTAAGGCTTTTGttgaaaaaggaaatttaaagcGTCATATGAAAATGAATCATCCGAACGCAGTATTACCAATACCTGgtctaattacaaatataaaaaccgAAATAAATCCAATTACAATAAATTCCAAACCAGTTGTTACATCAACACAATATCTAAATGAAAGAATTCCATTAATAACTAAagcaaatattttaccaataaataatttagtacaaCATCAACCGCCAACAATGCATACAATACAACAGATAACATCATCTGTAGGTACCACTTCTGGTAGTGGTAATACTAATCAAACATTGTCTGGAGGACTGGTACCACTAGTTACATCAACTATTACATCTCATACTAGTCAACAACAACAGAttcagcagcagcaacaacaacagcagcagcagcaacaacaacaacagcagcagcaacaacaacagcagcagcagcagcagcaacaacaacagcagcaacaacaacaacagcagcagcaacaacaacaacagcagcaacaacaccAACATCAACAACAGCCGCATATGACAACTCAGATGCATCAATCATCTGTAGTGACCGGAAATCCAAACGATGCAAttcaacaacagcagcagcaagCTGTACCAATTGCTATTATTCAAACTGCTGATTCACCTAGTATAGGTCGAACAACTATACAAATACAACATTTACATACAAATGTTGATCAGCATCCAgttgtatattaa
Protein Sequence: MNAEHSVEQHSEHLNADHSSDSQRQQQTSPHQQQQHPPNHQQQQIEHQQHDNRVLGGVIHPVSEAEIKQSLPLPNAPQLGKYWVVTNLFQGHGQNTYNLSSPPTTSSVPTLPPPISSTHTSTATSMPKSEIIKQEDMQQQHRQHNNSNNAQLITSVSSSSIQIPNPMLSNSQHQISNGTMITASQAEQLQVQLNSGNTMMVMDTTSNSAGGKLDKINMMNAQQNLNNDQMTITRNIIPTSLQQTIKQEKPFANGKPVTTHLQIQHQQLPPDSKMHVSHLLDVRNPDGSPIKIQPSDQELGKSLGVEMYKVNIEDLSQFLSYHEVFGKLHSGDVITTHPVSHTTTQQQTNVSNNTITVTANTNTIVGGTTNITNSTADLIMPKMENINQISGINNTAVNPHLIGDAAGTIPPANHTCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFQTSLDLTTHGKIHIGGPMFTCTVCFHVFANDASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCEVCGKKYTRKEHLANHMRSHTNDTPFRCEICSKSFSRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTYCTKAFTRKDHMVNHIRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHKCTYCKKTFTRKEHLTNHTRLHTGDSPHKCEYCQKTFTRKEHLNNHMRQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPYACETCGKSFPLKGNLLFHQRSHTKGQPQERPFKCEKCPKDFICKGHLVSHMRSHSGEKPHSCTLCSKAFVEKGNLKRHMKMNHPNAVLPIPGLITNIKTEINPITINSKPVVTSTQYLNERIPLITKANILPINNLVQHQPPTMHTIQQITSSVGTTSGSGNTNQTLSGGLVPLVTSTITSHTSQQQQIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQHQQQPHMTTQMHQSSVVTGNPNDAIQQQQQQAVPIAIIQTADSPSIGRTTIQIQHLHTNVDQHPVVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00644375;
90% Identity: -
80% Identity: -