Rlae023739.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963920725.1
- Location
- OY987256.1:47874815-47881947[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 3.8e+04 -7.1 6.5 154 154 152 152 48 217 0.58 2 3 2.5e-113 9.5e-109 364.4 30.6 1 299 307 596 307 597 0.92 3 3 0.15 5.7e+03 -2.6 5.0 221 244 626 649 599 671 0.46
Sequence Information
- Coding Sequence
- atgcaaactgacgaagaaaataataatattaaaccattaaataatattttaatgttgactgataaaaataattgtcataATGATGATGAACATCAACAAGAAGAGcctaacattataaataaaaaaatgaaacattCTGATGATAATTCTGATGATATATTTGAAGATTGTATTGAACAGAATCAGCAACAAGTTAAACCTCATCGACAACAATCAGAAGAATTTGATTTTAGTGATGCTGATTTTATTGATTCCGATGATgataatgaacaaaataataatatatctaaattaaataataaacaattatcaAATGTTGATGATCATGATtcgattatattaaaaattgatgaaactaatataaatttaaataatgatttattaaataattcttgtaataataataataatgataataatataattaatacaaataataataataatttaataaatttaaataatgataaacaagattatattaaattaaatcatgagTTAAATGGTGATTTTGTTACAACAAAGACAACATCTACAATTAATGATGAAAagactaataataaaaatgatcaaaaacaacatcaacaacaaaaaacatcaataaaattgaataaagccAATGACTTTAATGTAGGAAATAcagaaatacataaaatttataatgacaatGATCGTGGAAATTGTGGTGATGGTGGTGGCGTTGTTgacgacgatgatgatgatgcatTTTATtcagataatgatgatgatgatgatgaattaattgtacaatttttgGGACATGCTAATCAATACGTAGCCAACACAGCATTTGACTATGGAAAAGAATGGGAGTTTAGGATTTCAGAATTGGAAGCACAAGGGAAAGGTTCACATATTACTCGTTCAAGTTATAATTCAATGGCAACACATGAGGTGGCAGAAGCAAGGCTGGCAGCCAGGCGTACAGCTCGTGCTGAAGCACGAGAAATTCGTATGCGTGAACTGGAACGACAACAAAAAGAATTAGAACAAAATGCAGATCGTGTATTTGATATGCAAACAGCAGCTGGTATTGATCCTTTGGCTAGATCTCGTCTTACAATTACAACAAGTGGCGGTCATCAGATAGTTCGCGGCAATTCAATGTCATCAAGACGTAGCAGTGAAGATTCATTAGAGGAGGAAGGCAGAAGTTTACGTGATATTAGGCATGAGCTTAAggaTGTTGAAGAACGTTTCCGTAAAGCAATGATTGCTAATGCACAATTAGATAATGAAAGAGCGTCACAATCATACCAAATTCAATTACTCAAAGATAAAATGGAAGAAATGGAAGAATCATTTGCCCAATTACAACGTGAATTTAAAGATAAATCAAAAgataataatgcattaaaacGTAATTTGGATAAAGTTgaagaagaattaaaattagttcGAGGACAATTGGATGAACGTGATCATTTAATAACTGAACAGGGTTTAGTTATTGTATTAGTTGAAAATGACGATGGTTCAGATGCCAAACGTGCTCTAGTCAGTGTTGAGAATGCACAATTATTAGGTTCTGTTCAAGGTTCTttagatgttCGACTTAAGAAATTCACTgaagaaaaacaacaattacaaaaagaagttaaaaatttacaacaacaattaGATGATATTAAAAGTCAAGGTAGAGGACGAGGTGGTTCAATGAATGGTCCATTAGGTGTTGATGAAGATTATGAAGCACAAcgtgaagcaaataaaataatttcagaatataaatataaattacaaaaagctGAACAAGAAATTGCTAGTCTTCAAGCTAGTTTAGCAAGATCTGAAACACAAGTAATACGATATAAAAGTACAGCCGAAGCAGCTGAAAAAGCTGAatcagaattaaaaattgaaagaagAAAATTACAACGTGAGaatcgTGAAGCAACTGAACGTTTAGAAGAATTAGAAACATCTAATAAACATCTATTAAAACGATTGGATAAACTGAAGAATGCTAAAAGTACATTATTAAAAGAGCTTTGA
- Protein Sequence
- MQTDEENNNIKPLNNILMLTDKNNCHNDDEHQQEEPNIINKKMKHSDDNSDDIFEDCIEQNQQQVKPHRQQSEEFDFSDADFIDSDDDNEQNNNISKLNNKQLSNVDDHDSIILKIDETNINLNNDLLNNSCNNNNNDNNIINTNNNNNLINLNNDKQDYIKLNHELNGDFVTTKTTSTINDEKTNNKNDQKQHQQQKTSIKLNKANDFNVGNTEIHKIYNDNDRGNCGDGGGVVDDDDDDAFYSDNDDDDDELIVQFLGHANQYVANTAFDYGKEWEFRISELEAQGKGSHITRSSYNSMATHEVAEARLAARRTARAEAREIRMRELERQQKELEQNADRVFDMQTAAGIDPLARSRLTITTSGGHQIVRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKMEEMEESFAQLQREFKDKSKDNNALKRNLDKVEEELKLVRGQLDERDHLITEQGLVIVLVENDDGSDAKRALVSVENAQLLGSVQGSLDVRLKKFTEEKQQLQKEVKNLQQQLDDIKSQGRGRGGSMNGPLGVDEDYEAQREANKIISEYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAESELKIERRKLQRENREATERLEELETSNKHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -