Rlae025837.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhamphomyia laevipes
Gene Symbol
PAXBP1
Assembly
GCA_963920725.1
Location
OY987257.1:22886821-22890795[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-33 1e-28 101.8 1.6 3 272 608 816 606 818 0.93

Sequence Information

Coding Sequence
ATGTTTcgtaaaccaaaaaaatcaattcaacgTCGTGTTTTTACTAGTACACAAGACGATGATGATACTATTAATAATTCAGCTGGTGAAGATGAAAAAATGGACGTTGATGAACGTTGTTTGGCTCCGCCACCACCACCAAATGTTAAAAGTTCTGAtgtaaaaaaagagaaaaaacgTGATAAATTGTCTAAAATAAAACCTGATGAttctaaatcaaaaaaatcacttttaagtTTCGCGGATGATGaCGATGAGGGTGAAGTATTCCAAGTAAAAAAATCATCTCATAGTAAAAAAGTTATGCGAATGCTGGATAAAGAGCGACGTAagaaaaaatctacaaaattagATGATAAATacgataatattattgatattactaatgaaaatggaaaaacaaCATTGGGTAGTGGGagtagtaattataataattctaccAGTTCTAATTATATAGATAAATCCTCCACGGTTgagtcaaaaaataaatttaattcagataCTAATATTCAAACTGAAATTCGCACAGACGACTTTGTGCTTGTGGTTAAAAAATCGGAAccagataatattattttaaatggtagAGCAGCTTTATGTGCTGGGCGTGATGATATGTCATCTGAAGATGATGATCCGGATGATGGTGCACATAGATTTTCAAAACCcgataatttacaattatatttacaaagtgGTTCAATACCAGATGCAGCAATGATCCATGCAGCAAGAAAAAAACGACAAAAAGCTCGAGAACAAGGTGATTTTATACCAGTTGAAGAACCAAAAGAACCACCAAAAAAAGGTAATCGTTTAATACGTGATGGTGAAGATGATTGCTCGGAAGATGAAGAACGTGTTGACATGAATGCAATTACAGGAATTAAAGAGCGCGAAGAACGTCGCGAAATATTTTATTCCGTACAGAATGATTattctgaACAGGATTCCGATCATGAACTTAATGAATGGGAAAATCAACAAATTCGAAAAGGTGTTACTGGAGCTCAGcttGTATCGGCTGCTCAACAAGAATCATTAATATCacgtttttcaattaaaaattcaaataatcatCAAATTGATTATGATATACCACAATCAACTGGAACATTATTAGAACAAGCATATGCTAAAAATCAATTAGAAAAACCtagacaaatattattaaagacaCAGAAAAATGAAACGAAACCAACTGGACCACGAACACCACAAGAAATTACTGATTGTCTAAGAACCAGATTAGATCAATTAAAACAATTGAATAGAAATCATTTGAATGATATTGAacgtattattattaatttgaaaacagTTAAATTGGATTCATTAGCGTGTACACAAAATGCTCCGACAGCGGCAGCTAAATATCGTTTTTATCAGGAACTCAGAGGATATATAATTGATTTGATTGAATGTTTAGatgaaaaaGTTCCACAAATAAATGATTTGGAAAAACGTTCCCTAAATTTAATGTCCAAAcatgcaaattatttaattgaaagacGAAGACAAGATGTTAGAGATCAAGCAAAAGAAATGGCTGATGCGTCaaagcCTGGAAGCGCAAGTTCAAAAAAAGGACCAGAACATGAAGAACATATTCGAAGAGCTGCTGAACGTGAAGGTCGTAGAACAAGAAGACGATGTGAACGTGAAAAAAATGATATGTTGGCTTCACATTTAGATGGAATGTCCAGTGATGATGAAATGCATGATCAGGAATTAACACAATATCGCACAGATTTAGATGAAATTGATGTTGAAGCTCATGATTTATTTACGGATACTAACGAAGATTATTgtcaaattggaaatattttaatgaaatttgaagtATGGCGTAAAACTGATATGGAATCATATAAAGATGcatttgttaatttatgtttaccGAAAattgttGGTCCAATGGTTCGTCTGTCAATGATTACATGGAATCCATTTGAAGCTAAAAATCAAGATATTGATAAAATGGACTGGTATCCAATGTGTATGCAGTATGGTTTAGTTGATAATGAAACTGAAGAATCACTAGAAAATGATCCGGATTTGAAGTTTGTTCCAATGattgttgataaaattattttaccaaaattaactgaaattattgaaaattgttggGATCCGCTATCTACAACACATACTCTTCGATTAATTAGTGTTATTAGACGATTGGGTCGTGATTATCCACTTAGAGAACAATCAAAAACATTACAAACGCTTATTAATTCCATATTAGATAAAATGAAGAACGCTTTAGAGAACGATGTTTTCATTCCAGTGTTTCCGaaacaaatgcAAGAAGCAAAAACATCATTTTTTCAACGACAATTTTGTAGTggtctaaaattatttagaaatttattaagttgGCAAAGTTTAATTGCTGATCATTCATTACGAGAATTAGCAATTTCATCACTATTAAATCGTTATTTATTATCTGCAATGAGGgttTGTACACCAAATGATGCTATTTCGAAAGCTTATGTAATTGTTAATACATTACCGACAACATGGTTACAACCAGAATCAATAACATTAAAAAGTCTTAATCTAtttgtcaattttattaaaattatccttgaacaattagataaaaaaaatccattacaaattcaTACTTATGAAAAggcaaaacaaattttacaaaggCTTCATAGTTattaa
Protein Sequence
MFRKPKKSIQRRVFTSTQDDDDTINNSAGEDEKMDVDERCLAPPPPPNVKSSDVKKEKKRDKLSKIKPDDSKSKKSLLSFADDDDEGEVFQVKKSSHSKKVMRMLDKERRKKKSTKLDDKYDNIIDITNENGKTTLGSGSSNYNNSTSSNYIDKSSTVESKNKFNSDTNIQTEIRTDDFVLVVKKSEPDNIILNGRAALCAGRDDMSSEDDDPDDGAHRFSKPDNLQLYLQSGSIPDAAMIHAARKKRQKAREQGDFIPVEEPKEPPKKGNRLIRDGEDDCSEDEERVDMNAITGIKEREERREIFYSVQNDYSEQDSDHELNEWENQQIRKGVTGAQLVSAAQQESLISRFSIKNSNNHQIDYDIPQSTGTLLEQAYAKNQLEKPRQILLKTQKNETKPTGPRTPQEITDCLRTRLDQLKQLNRNHLNDIERIIINLKTVKLDSLACTQNAPTAAAKYRFYQELRGYIIDLIECLDEKVPQINDLEKRSLNLMSKHANYLIERRRQDVRDQAKEMADASKPGSASSKKGPEHEEHIRRAAEREGRRTRRRCEREKNDMLASHLDGMSSDDEMHDQELTQYRTDLDEIDVEAHDLFTDTNEDYCQIGNILMKFEVWRKTDMESYKDAFVNLCLPKIVGPMVRLSMITWNPFEAKNQDIDKMDWYPMCMQYGLVDNETEESLENDPDLKFVPMIVDKIILPKLTEIIENCWDPLSTTHTLRLISVIRRLGRDYPLREQSKTLQTLINSILDKMKNALENDVFIPVFPKQMQEAKTSFFQRQFCSGLKLFRNLLSWQSLIADHSLRELAISSLLNRYLLSAMRVCTPNDAISKAYVIVNTLPTTWLQPESITLKSLNLFVNFIKIILEQLDKKNPLQIHTYEKAKQILQRLHSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00643212;
90% Identity
iTF_00643212;
80% Identity
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