Rlae032922.1
Basic Information
- Insect
- Rhamphomyia laevipes
- Gene Symbol
- -
- Assembly
- GCA_963920725.1
- Location
- OY987259.1:30308907-30315117[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-10 2.1e-07 31.6 0.0 1 38 574 612 574 617 0.90 2 4 3.8e-13 2.8e-10 40.8 0.2 2 39 629 666 628 669 0.94 3 4 1.1e-16 8.1e-14 52.1 0.0 1 45 683 728 683 728 0.98 4 4 1.2e-16 8.9e-14 52.0 0.1 1 43 735 778 735 779 0.96
Sequence Information
- Coding Sequence
- ATGATTCTCGGATATAATGCCACACCAGCTCTTACAGCTTTGGGTCTTTTAAGAACTGCCGAGCAATTAAAAATCAAAGGATTATGCGAAACAGCTGATACCGTAGATGAAACTTCAGCAGAAACTGGATCAACACCAACAACAGCTACAATAACAATACCTCAGGAGACAATTATTCAACAACAGCAAATTGTCACATCAATTGGCAACAATTCAATACAAAACGCtttaaatcaacaacaaaataataataatagtattaataGTGGGATTAATAGTATTAGTGGTCAGGCGCAATCACAATCATTAATACCATCTTCGTCATTGGTGATACCACCAGCTGCAACATTAACTACCCAAACAACACAAAGGAAATCCAGAATACGGAAACGTTCAAAATCACCGAATGAAttagcaacaacaacagcagcaataAATAACCAGCAACAACATCAATCAATTATAACAAATCAATCAACATTTAACGGTGGAAcatctattattaatttaaattcaggaCTTGCTACAATTGGTGGTATTGTTACAGGTGGTAGTAGTAATAGTAGTAATCGTAGTATAATAGCATTGTCGTCAGGGGCTGGATCATCATCACATAGCAATTCTAATTTAAGTTGTAATAATAGTGGAAACATAAGTGATAAAcatcaaaaatctttaattgtaACAACAGGTGGATCCACAATAAGTGAATCATCATCACCATCTAGTATTTCAAGTGGTAATAACGTTAAGCcaccaaaaatttgtaaaacagaAAATTCGTCACCAAATAATGGAAGTGGTGTTGTGCAACAAGGTACAACAACAGCTATTGTAACACAAATCGTCGTAGCACGTGAAggaaaagataataaaaatatggccAGTTTAGGAATGGGAATGaaCGGTGGGCTCTTGGGAGTACCAATGGGGTTTTTAGATTTTGCTCCAGAACCACCGGCACCATCAGCAACACCAGTTTCTGTTAGTGAACATGTGGATATGAATTGTGCACCAAGTAATGATACTAGAGATTTAACAAATCCCACCGAATCACTTGATATAGACAATCATTTAGCTCAGCATATAATACAACGTTTAGATCAATCACCAATGCATCAAATTCAGCATcctcaacaacaacagcagcaacagaACCATATTCAACATCACCATCAGCAGCAgcagcatcatcatcatcagcagcagcagcaacaacaacagcaacaacatcatcaaAACAGTACCACCAATAATTCCACCGatgattcaaattcaaatttaatacaaaatattaaaagtgaagTAATTGAAGTAAAACATCATCCACATTTGatacaacatcatcatcagcaacaacaacaacatggacaatcacatcaacaacaacagcaacaaggACAAtcacatcaacaacaacaacagcagcagcagcagcaacaacaacagcaacaacaacagcaacaacatcaaGTAATTACAAATGCGACTGTTATGGAAATTGATccggaaaatataaaacatgaaCCCGGTATGATAATAACACCAGAAATAGTCACTATGATGACTACCGGACATATGGACATTTACAATTCGGACACAAGTGAGGATTCCCTGATGATTGCGAATGGCAGCCCAAATGACAATAATGCTGAGCCGCATTATACGAATCTGGATCAACAGCACGACAATAGTAAGTTAAATGGCCCGAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCACTGAAGAATCACAATATGAGCCTAACGAAAGCATCAGTCACCTATGGTATACCATCAACAACATTGTGGCAGAGAGCACATCGGATGGGCATTGAGACACCAAAAAAAGAAGGCACAACCAAATCATGGAATGAAGAGGCTTTAAATAGTGCTTTAGAAGCATTACGTACTGGTCAAATATCAGCAAATAAAGCATCAAAAGCATATGGTATTCCATCCTCAACATTGTATAAGATAGCTAGACGAGAGGGTATACGATTAGCAGCACCATTTAATGCCGCACCAACAACATGGACACCAGAAGATTTAGAACGAGCCCTTGAAGCAATTCGAGCTGGTCATACGTCAGTACAAAAGGCAAGCATGGAATTTGGTATACCAAcagGTACACTTTATGGACGATGTAAACGTGAAGGTATTGAATTGTCACGCTCAAATCCTACACCATGGTCTGAGGATGCAATGAATGAAGCTTTAGTTGCTGTTAGAGTTGGTCATATGTCCATAAATCAGGCAGCAATACATTATAATCTTCCATATAGTTCATTATACGGTCGATTCAAACGTGCCAAATATGATACAACTGCAACCCCGGCTGTAACGGGTACAACATCAAGTAATACTAGCATAAATACATCtggtaatattgaaataatcgaTCAAAGTCCAGAAAATtcgGTACATCTATTACAACAGTTCCAATATAGCCCTGGTCCAGCAACACCACAGCCACATACTCACCATCAGCAGCAGCAACAaagtcaacaacaacaacatcatatTCAAATTCAACATCATTCACAACAATCTCAACAGCAGCATCATCACACTCAGCAACATTTACAACAACAAGATGTAGTCACATCTACCAGTCAagttcatcatcaacaacaacaacaacaaactggtcaaattcaacaaatttatcatcatcatagCACACCAGAGAGAagttga
- Protein Sequence
- MILGYNATPALTALGLLRTAEQLKIKGLCETADTVDETSAETGSTPTTATITIPQETIIQQQQIVTSIGNNSIQNALNQQQNNNNSINSGINSISGQAQSQSLIPSSSLVIPPAATLTTQTTQRKSRIRKRSKSPNELATTTAAINNQQQHQSIITNQSTFNGGTSIINLNSGLATIGGIVTGGSSNSSNRSIIALSSGAGSSSHSNSNLSCNNSGNISDKHQKSLIVTTGGSTISESSSPSSISSGNNVKPPKICKTENSSPNNGSGVVQQGTTTAIVTQIVVAREGKDNKNMASLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVSVSEHVDMNCAPSNDTRDLTNPTESLDIDNHLAQHIIQRLDQSPMHQIQHPQQQQQQQNHIQHHHQQQQHHHHQQQQQQQQQQHHQNSTTNNSTDDSNSNLIQNIKSEVIEVKHHPHLIQHHHQQQQQHGQSHQQQQQQGQSHQQQQQQQQQQQQQQQQQQQHQVITNATVMEIDPENIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNNAEPHYTNLDQQHDNSKLNGPKTWTQDDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGTTKSWNEEALNSALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASMEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRAKYDTTATPAVTGTTSSNTSINTSGNIEIIDQSPENSVHLLQQFQYSPGPATPQPHTHHQQQQQSQQQQHHIQIQHHSQQSQQQHHHTQQHLQQQDVVTSTSQVHHQQQQQQTGQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00644006;
- 90% Identity
- -
- 80% Identity
- -