Basic Information

Insect: Rhamnusium bicolor
Gene Symbol: stc
Assembly: GCA_029963845.1
Location: JANEYF010000147.1:86647-105243[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4 7.8e+04 -4.8 3.4 6 10 420 424 417 424 0.69

2 17 1.9 3.6e+04 -3.1 0.3 4 10 450 456 450 456 0.90

3 17 1.4e-05 0.27 13.4 13.2 3 18 464 479 462 480 0.93

4 17 1e-08 0.0002 23.3 12.0 1 19 516 534 516 534 0.98

5 17 6e-10 1.2e-05 27.3 10.4 1 18 574 591 574 592 0.99

6 17 1.3 2.5e+04 -2.5 0.2 3 6 598 601 598 602 0.80

7 17 0.00028 5.6 9.1 11.7 4 16 639 651 632 653 0.82

8 17 2.8 5.5e+04 -3.6 2.0 5 10 682 687 682 687 0.93

9 17 0.01 2e+02 4.2 9.0 1 11 693 703 693 704 0.96

10 17 3.1 6e+04 -3.7 0.8 4 10 708 714 707 714 0.69

11 17 4e-10 7.9e-06 27.8 14.5 1 18 720 737 720 738 0.98

12 17 3.6 7e+04 -4.0 1.1 5 10 766 771 766 771 0.83

13 17 0.0046 89 5.3 10.8 9 19 784 794 777 794 0.85

14 17 0.41 8.1e+03 -1.0 0.3 6 11 797 802 797 803 0.94

15 17 4.7e-09 9.3e-05 24.4 16.4 1 19 830 849 830 849 0.97

16 17 0.052 1e+03 1.9 17.6 1 18 859 877 859 878 0.92

17 17 0.83 1.6e+04 -1.9 2.5 6 11 944 949 943 950 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4	7.8e+04	-4.8	3.4	6	10	420	424	417	424	0.69
2	17	1.9	3.6e+04	-3.1	0.3	4	10	450	456	450	456	0.90
3	17	1.4e-05	0.27	13.4	13.2	3	18	464	479	462	480	0.93
4	17	1e-08	0.0002	23.3	12.0	1	19	516	534	516	534	0.98
5	17	6e-10	1.2e-05	27.3	10.4	1	18	574	591	574	592	0.99
6	17	1.3	2.5e+04	-2.5	0.2	3	6	598	601	598	602	0.80
7	17	0.00028	5.6	9.1	11.7	4	16	639	651	632	653	0.82
8	17	2.8	5.5e+04	-3.6	2.0	5	10	682	687	682	687	0.93
9	17	0.01	2e+02	4.2	9.0	1	11	693	703	693	704	0.96
10	17	3.1	6e+04	-3.7	0.8	4	10	708	714	707	714	0.69
11	17	4e-10	7.9e-06	27.8	14.5	1	18	720	737	720	738	0.98
12	17	3.6	7e+04	-4.0	1.1	5	10	766	771	766	771	0.83
13	17	0.0046	89	5.3	10.8	9	19	784	794	777	794	0.85
14	17	0.41	8.1e+03	-1.0	0.3	6	11	797	802	797	803	0.94
15	17	4.7e-09	9.3e-05	24.4	16.4	1	19	830	849	830	849	0.97
16	17	0.052	1e+03	1.9	17.6	1	18	859	877	859	878	0.92
17	17	0.83	1.6e+04	-1.9	2.5	6	11	944	949	943	950	0.88

Sequence Information

Coding Sequence: ATGtctttttataataatcagTCAAATTGCTTTGTAAATTTCAATTCAGTAGACGAAGCTCATAACAGTGCTCAAAGTTCATGTAATGATCACTCAAACCTACCAAAGGTAGCCCCTGAAGTCAGTGTAAGTTATTCAACATTGGAACCGACAGCTCAAGAATTCCATCCTGCGAATCAGTCAGGTTCCATTAATGGAGCTGTCAAAAAGAAAACTCAAAATGAAAGGAGTAAGTATAGAGATAACGGAAGAGGTAGGAATAATCGATATGGAAGTGGTAGAACATTTAATGGTTCTaaatatgattataataataaaattgatagaAGCACCAATGATGAAGAAAGGAATAAGATTTTACAAGATACAGCCAGCTTTTTAAGAAATTCCAGTCATGagaaaagtgaaaatgttgatGAGGATTCACTTTCTCACAGTGGCAGTTATTCTGTTACAAACTTGTCAAGGGAGAATCGAAATTCAACAAATTTTGGTCGAGATCAACAAgagcaatataataaaaattatggaaatcaaagtaaatataatgaaaatatagaaacaacTTATCAGAAACCTAAAGCTTCCTCAGAAAATCAGAGATCATTTCAGAGTAGACATTTTAAAGGTAGCGGAAGAGTAAATGATAAGGCAAATAGATCTAGTTTTCATAGTAAATATGAAcgaagttataattattatgaaaattctgAAAGAAATAGCAGTTTTAATAGACACAATCAAAGTTATAGTTATCAGGATAAACCAGGCAAGAGTTACAATTACTgtgataaaaaaagtagtttttatgATAATTCCTGTATCGATTCAGTAGATAAATCTGAAAGAAATAATGCGGATCAGTTTGATaacagatataattattatgaggGAATGGAAGGTGGTTatggtaataattttaaaagtggcTTTAAACCATATGATAATAGGAATGGTAATAAATATGGAGAAGGAAAAAATCAAAGAGATTGGAGAAAATCAAATCAGGCAAATAGAGATAAAACTTCCAAAGATTTTATtgtgaaatcaaaaaaaaaatTTGATGCGGCATCTCAAAGAGAACGTCTGGAGGAAATGTTAAACCGTCGTCTTTTAGAATGCCTCATCtgttgtgaaaaaattaaacatatagaTAAGGTTTGGAATTGTATGCAGTGCTATCACATTTTGCATTTAAGTTGTGTGGCGGCCTGGGCTAAATCCTCTAAAGTTGAAAATGGCTGGCGTTGCCCAGCTTGCCAAAATGTATGTACTGATGTTCCTATATATTATATGTGCTACTGTAGCAAAAAAATAGATCCAAGATATGATCCAAGTACAATCCCTCATGGATGTGGGGAAATTTGCTTAAGAAAAGGCCGGACCTGTGAACATAAATGCACTATACTTTgccatccaggtccgtgtcctgACTGTAATGTGATGGTATCAAAACCATGCGGTTGTGGATCAACACAACAAGTGGTAAAATGTAGTACTGACATAGAAATAGTTTGTGATTCAATTTGCAATAAAACCTTAGATTGTGGCATACATAAATGTAAATCTAGATGTCATTCTGGAAATTGTAGTTCCTGTAGTGAGATTATAATACAAGAATGTTATTGTGGAAAAGTAGGTAGAAAAGTTTCCTGCTCAGCTGAATTTTCTGGTAGTACCCAATATGCATGCGAAGATATTTGTGGAAAAACGTTAACATGTGGGAATCACAAATGTCAGAGAATATGCCATGAAGGTCTCTGTGACACTTGCATTCGAGACGTTAATATCATACACACTTGCCCTTGTGGAAAAACCCCTCTTGAAATACCAAGAACTTCTTGTTTGGATTCCATTCCATGCTGTGATAAGATATGTGGAAGATCACTTAAATGCGGCCAGCCAAGTTTGCCGCATAAATGCAGAGAACTATGCCATGAAGGTATTTGTCCATGTCCTCTAACTACTGTGGTTCGGTGTCGCTGTGGTCATATGGATAAGGAGTTGCCATGCGAAAAACTTACTACTAAAGCTGATGATGCCAGATGTGAGAAAAAATGCACAAAGaAACGTATGTGTGGTAAGCATAGATGCAACCAACGTTGTTGTATAGAAATTGAGCATTTCTGCCCACTTCCTTGTAACCATCAGCTTTCATGTGGCCAACATAGATGCGAACGCACATGCCATTCTGGTCGATGTCCTCCATGTATGGAAACAAGTTTCGAAGAGTTATATTGTGAATGTGGAGCCAGTGTAATATATCCACCTATTCCATGTGGTACAAAGCCTCCTAATTGCACCAAACCTTGTTCAAGGCAGCGAGCTTGTAGCCATGATGCAAATCATAGCTGCCATATTGGTCCTTGTCCTCCTTGCACTGTGCTCTGTAAAAGGTGGTGCCATGGACATCATGAACAAAGATCAGCCATTCCTTGTCATCAAGAGACCTTTAGTTGTGGTTTACCTTGCGGAAGGAAAATGCCTTGTGGTAGACACAAATGTAACAAACCATGCCATGAAGGGCCATGTCCCATGCCTTGTAAACAACCTTGCAATGTTAGGAGAATTTTATGTGGACATCCTTGTGGAAAACCATGTCATGATCCACCTTGCCCAGAAAGCAGTTGCAAACAAAATGTTCCAGTTACTTGTTCATGTGGTCTTCAAAAAAGTACCAGACCTTGTATAGATGTGGCAGAGGAGTTTAGAAACATTGAAATGGcccaattaaaagaaaaaatgagtGATTTGTCCAAAGACCAAACAGTAGATATTTCCGATATCATCAGCAAACCCAAGAAGCCTAGTGTTCTTaaaataTTGGAGTGTACGGAAGAATGTCATGTTTTGGAAAGAAACCGGAGACTTGCTATTGGTTTACAAATAAGAAATCCAGATTTAAGCCAGAAATTAACACCAAAATATACAGATTTTATGAGACAGTGGGCAAAAAAAGACCCCCATTTCTGTCAAAGAATTCATGATAAGTTAACGGAACTTGTTCAGTTGGCTAAACAAAGTAAACAGAAAAGTCGATCTTATTCCTTTGATTCTATGAATAGAGACAAGCGGCATTTTATTCATGAGTATTGCGAACACTTTGGGGTTGAAAGTGCTGCTTATGATATGGAACCAAATAGAAACATCGTTGCCACTGCTAATAAAGATAAATCTTGGTTACCTAGTATGAGTTTATTAGAGGTTATTCAGAGAGAAAATGGTCAACGAAAAGTGCCAGGGCCTATTTCAGTTTTGAGTAAAACTATTGCAAGTAAACCTGAAACTGTTTCTTTAAGATTACCATGCCAAATGCAGAGGTCAAGTACTCATCCTGGAGAGTTCGTAGATTATTTTGATCCACCAGTgtag
Protein Sequence: MSFYNNQSNCFVNFNSVDEAHNSAQSSCNDHSNLPKVAPEVSVSYSTLEPTAQEFHPANQSGSINGAVKKKTQNERSKYRDNGRGRNNRYGSGRTFNGSKYDYNNKIDRSTNDEERNKILQDTASFLRNSSHEKSENVDEDSLSHSGSYSVTNLSRENRNSTNFGRDQQEQYNKNYGNQSKYNENIETTYQKPKASSENQRSFQSRHFKGSGRVNDKANRSSFHSKYERSYNYYENSERNSSFNRHNQSYSYQDKPGKSYNYCDKKSSFYDNSCIDSVDKSERNNADQFDNRYNYYEGMEGGYGNNFKSGFKPYDNRNGNKYGEGKNQRDWRKSNQANRDKTSKDFIVKSKKKFDAASQRERLEEMLNRRLLECLICCEKIKHIDKVWNCMQCYHILHLSCVAAWAKSSKVENGWRCPACQNVCTDVPIYYMCYCSKKIDPRYDPSTIPHGCGEICLRKGRTCEHKCTILCHPGPCPDCNVMVSKPCGCGSTQQVVKCSTDIEIVCDSICNKTLDCGIHKCKSRCHSGNCSSCSEIIIQECYCGKVGRKVSCSAEFSGSTQYACEDICGKTLTCGNHKCQRICHEGLCDTCIRDVNIIHTCPCGKTPLEIPRTSCLDSIPCCDKICGRSLKCGQPSLPHKCRELCHEGICPCPLTTVVRCRCGHMDKELPCEKLTTKADDARCEKKCTKKRMCGKHRCNQRCCIEIEHFCPLPCNHQLSCGQHRCERTCHSGRCPPCMETSFEELYCECGASVIYPPIPCGTKPPNCTKPCSRQRACSHDANHSCHIGPCPPCTVLCKRWCHGHHEQRSAIPCHQETFSCGLPCGRKMPCGRHKCNKPCHEGPCPMPCKQPCNVRRILCGHPCGKPCHDPPCPESSCKQNVPVTCSCGLQKSTRPCIDVAEEFRNIEMAQLKEKMSDLSKDQTVDISDIISKPKKPSVLKILECTEECHVLERNRRLAIGLQIRNPDLSQKLTPKYTDFMRQWAKKDPHFCQRIHDKLTELVQLAKQSKQKSRSYSFDSMNRDKRHFIHEYCEHFGVESAAYDMEPNRNIVATANKDKSWLPSMSLLEVIQRENGQRKVPGPISVLSKTIASKPETVSLRLPCQMQRSSTHPGEFVDYFDPPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01291146; iTF_00887118;
90% Identity: -
80% Identity: -