Rbic001010.2
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- stc
- Assembly
- GCA_029963845.1
- Location
- JANEYF010000115.1:86717-108274[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.7 5.3e+04 -3.6 3.0 6 10 203 207 199 207 0.61 2 18 1.2 2.4e+04 -2.5 0.3 4 10 233 239 233 239 0.90 3 18 1.2e-05 0.24 13.5 13.4 3 18 247 262 246 263 0.93 4 18 6.6e-09 0.00013 24.0 12.0 1 19 299 317 299 317 0.98 5 18 2.1 4.1e+04 -3.2 0.4 6 10 347 351 346 351 0.90 6 18 3.8e-10 7.5e-06 27.9 10.4 1 18 357 374 357 375 0.99 7 18 0.83 1.6e+04 -1.9 0.2 3 6 381 384 381 385 0.80 8 18 4.6e-07 0.009 18.1 13.6 4 19 422 437 415 437 0.87 9 18 1.8 3.6e+04 -3.0 2.0 5 10 466 471 466 471 0.93 10 18 0.0065 1.3e+02 4.8 9.0 1 11 477 487 477 488 0.96 11 18 1.7 3.2e+04 -2.9 0.8 4 10 492 498 491 499 0.62 12 18 2.6e-10 5.1e-06 28.4 14.5 1 18 504 521 504 522 0.98 13 18 2.3 4.6e+04 -3.4 1.1 5 10 550 555 550 555 0.83 14 18 0.0029 57 5.9 10.8 9 19 568 578 561 578 0.85 15 18 0.27 5.3e+03 -0.4 0.3 6 11 581 586 581 587 0.94 16 18 3.4e-08 0.00066 21.7 19.8 1 19 614 633 614 636 0.97 17 18 0.033 6.5e+02 2.5 17.6 1 18 643 661 643 662 0.92 18 18 0.54 1.1e+04 -1.3 2.5 6 11 699 704 698 705 0.88
Sequence Information
- Coding Sequence
- ATGtctttttataataatcagTCAAATTGCTTTGTAAATTTCAATTCAGTAGACGAAGCTCATAACAGTGCTCAAAGTTCATGTAATGATCACTCAAACCTACCAAAGGCAGCCCCTGAAGTCAGTGTAAGTTATTCAACATTGGAACCAACAGCTCAAGAATTCCATCCTGCCGAATCAGTCAGTAGAAAATCTGAAAGAAATAATGCAGATCAGTTTGATaacagatataattattatgaggGAATAGAAGGTGGTTatggtaataattttaaaagtggcTTTAAACCATATGATAATAGGAATGGTAATAAATATGGAGAAGGAAAAAATCAAAGAGATTGGAGAAAATCAAATCAGGCAAATAGAGATAAAACTTCCAAAGATTTtgtgaaatcaaaaaaaaaatTTGATGCGGCATCTCAAAGAGAACGTCTGGAGGAAATGTTAAACCGTCGTCTTTTAGAATGCCTCGTCtgttgtgaaaaaattaaacatatagaTAAGGTTTGGAATTGTATGCAGTGCTATCACATTTTGCATTTAAGTTGTGTGGCGGCCTGGGCTAAATCCTCTAAAGTTGAAAATGGCTGGCGTTGCCCAGCTTGCCAAAATGTATGTACTGATGTTCCTATACATTATATGTGCTACTGTAGCAAAAAAATAGATCCAAGATATGATCCAAGTACAATCCCTCATGGATGTGGGGAAATTTGCTTAAGAAAAGGCCGGACCTGTGAACATAGATGCACTATACTTTgccatccaggtccgtgtcctgACTGTAATGTGATGGTATCAAAACCATGCGGTTGTGGATCAACACAACAAGTGGTAAAATGTAGTACCGACATGGAAATAGTTTGTGATTCAATTTGCAATAAAACCTTAGATTGTGGCATACATAAATGTAAATCTAGATGTCATTCTGGAAATTGTAGTTCCTGTAGTGAGATTATAAAACAAGAATGTTATTGTGGAAAAGTAGGTAGAAAAGTTTCCTGCTCAGCTGAATTTTCTGGTAGTACCCAATATGCATGCGAAGATATTTGTGGAAAAACGTTAACATGTGGGAATCACAAATGTCAGAGAATATGCCATGAAGGTCTCTGTGACACTTGCATTCGAGACGTTAATATCATACACACTTGCCCTTGTGGAAAGACCCCTCTTGAAATACCAAGAACTTCTTGTTTGGATCCCATTCCATGCTGTGATAAGATATGTGGAAGATCACTTAAATGTGGCCAGCCAAGTTTGCCGCATAAATGCAGAGAACTATGCCATGAAGGTATTTGTCCACCATGTCCTCTAACTACTGTGGTTCGGTGTCGCTGTGGTCATATGGATAAGGAGTTGCCATGCGAAAAACTTACTACTAAAGCTGATGATGCCAGATGTGAGAAGAAATGCACAAAGaAACGTATGTGTGGTAAGCATAGATGCAACCAACGTTGTTGTATAGAAATTGAGCATTTCTGCCCACTTCCTTGTAACCATCAGCTTTCATGTGGCCAACATAGATGCGAACGCACATGCCATTCTGGTCGATGTCCTCCATGTATGGAAACAAGTTTCGAAGAGTTATATTGTGAATGTGGAGCCAGTGTAATATATCCACCTATTCCATGTGGCACAAAGCCTCCTAATTGCACCAAACCTTGTTCAAGGCAGAGAGCTTGTAGCCATGATGCAAATCATAGCTGCCATATTGGTCCTTGTCCTCCTTGCACTGTGCTATGTAAAAGGTGGTGCCATGGACATCATGAACAAAGATCAGCCATTCCTTGTCATCAAGAGACCTTTAGTTGTGGTTTACCTTGCGGAAGGAAAATGCCTTGTGGTAGACACAAATGTAACAAACCATGCCATGAAGGGCCATGTCCCATGCCTTGTAAACAACCTTGCAATGTTAGGAGAATTTTATGTGGACATCCTTGTGGAAAACCATGTCATGATCCACCTTGCCCAGAAAGCAGTTGCAAACAAAATGTTCCAGTTACTTGTTCATGTGGTCTTCAAAAAAACCAAACAGTAGATATTTCCGATATCATCAGCAAACCCAAGAAGCCTAGTGTTCTTaaaatATTGGAGTGTACGGAAGAATGTCATGTTTTGGAAAGAAACCGGAGACTTGCTATTGGTTTACAAATAAGAAATCCAGATTTAAGCCAGAAATTAACACCAAAATATACAGATTTTATGAGACAGTGGGCAAAAAAAAGACCCCCATTTCTGTCAAAGAATTCATGA
- Protein Sequence
- MSFYNNQSNCFVNFNSVDEAHNSAQSSCNDHSNLPKAAPEVSVSYSTLEPTAQEFHPAESVSRKSERNNADQFDNRYNYYEGIEGGYGNNFKSGFKPYDNRNGNKYGEGKNQRDWRKSNQANRDKTSKDFVKSKKKFDAASQRERLEEMLNRRLLECLVCCEKIKHIDKVWNCMQCYHILHLSCVAAWAKSSKVENGWRCPACQNVCTDVPIHYMCYCSKKIDPRYDPSTIPHGCGEICLRKGRTCEHRCTILCHPGPCPDCNVMVSKPCGCGSTQQVVKCSTDMEIVCDSICNKTLDCGIHKCKSRCHSGNCSSCSEIIKQECYCGKVGRKVSCSAEFSGSTQYACEDICGKTLTCGNHKCQRICHEGLCDTCIRDVNIIHTCPCGKTPLEIPRTSCLDPIPCCDKICGRSLKCGQPSLPHKCRELCHEGICPPCPLTTVVRCRCGHMDKELPCEKLTTKADDARCEKKCTKKRMCGKHRCNQRCCIEIEHFCPLPCNHQLSCGQHRCERTCHSGRCPPCMETSFEELYCECGASVIYPPIPCGTKPPNCTKPCSRQRACSHDANHSCHIGPCPPCTVLCKRWCHGHHEQRSAIPCHQETFSCGLPCGRKMPCGRHKCNKPCHEGPCPMPCKQPCNVRRILCGHPCGKPCHDPPCPESSCKQNVPVTCSCGLQKNQTVDISDIISKPKKPSVLKILECTEECHVLERNRRLAIGLQIRNPDLSQKLTPKYTDFMRQWAKKRPPFLSKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370670;
- 90% Identity
- -
- 80% Identity
- -