Rbic044923.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- -
- Assembly
- GCA_029963845.1
- Location
- JANEYF010003725.1:98420-108561[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.11 23 7.7 4.8 1 19 192 210 192 215 0.94 2 12 1.1e-06 0.00024 23.4 0.2 1 23 221 243 221 243 0.98 3 12 0.00015 0.032 16.7 0.5 2 20 249 267 248 269 0.95 4 12 1.1e-05 0.0022 20.4 1.1 1 23 280 302 280 302 0.97 5 12 0.0046 0.94 12.1 3.2 1 23 312 334 312 334 0.98 6 12 1.2e-05 0.0025 20.2 0.3 1 23 340 362 340 362 0.98 7 12 6.5e-07 0.00013 24.2 1.7 1 23 368 390 368 390 0.99 8 12 6.5e-06 0.0013 21.0 3.6 1 23 396 418 396 418 0.96 9 12 2.5e-05 0.0052 19.2 2.7 1 23 424 447 424 447 0.96 10 12 2.8e-06 0.00058 22.2 0.2 2 23 454 475 453 475 0.96 11 12 1.8e-06 0.00037 22.8 0.4 1 23 481 503 481 503 0.98 12 12 1.7e-05 0.0034 19.8 3.8 2 23 510 532 509 532 0.94
Sequence Information
- Coding Sequence
- ATGGACGACCCAATGGTGGTTGTTCCAGTTAAAAAGGAAATGGCTGATATTAAGGCTGAAGCTGAATGTACAGAAGCTGTCGAAGAAACGATAGATTGTACCTCAATGGGAACCACAGAGGTGCACACAGTTGTTcttcaaaatatacaaatacatgAAGGAGGAGAAGACCttcctataattttaaatgattttccacaaaacaactCCGATGGAAATCTCCAAATTGCTACTTTGGAAGAAGACGTGATTCATACATATATCATAGATAATACTGAATATGAACACCATGAAGTTCAAGAAATAATTTACGAAGATCAAGGCGACGAGGAAGGTGCAATACATTATGTAATAGAAGAGCAGACAGAGTATGAAGAAAATACTGAACCTAACAGTGAATACAACGATGAATCGATGGATTATACTTATGAAGAAGAAAATGAAGAGGCTTGGAAACGACACATCACTGTAAATCACGGTGAGAATGACCCAGAAGAAGATGATGATCCTCTTACCTTTCAAGTGTGTCCTTGTTGTGGGGAGCCTTCGGATTCAGCTCATACGttAGGCGACTTCAAGTGTGACCAATGCGATAAGTTATTCATACAACAAAACTGCCTGGATCGTCATTGTAGTCTCGAACATCCTGTTGGAGATACCTATGCATGTGCTGAGTGTGTAAAAACCTTCAAAACAAAGGAGCAACTCATCGATCATATGAGAATACATCCAATTAAGTCAGTAAAGTGTCTCGGCTGTAACAGGGAATTTACCCGGAAGTACCATCTGGATAGGCACATTGGTCAAACAGGATGCATGGGACTTCCTAGGAAGGCGTTTGATTGCCGGGTTTGCAAACGTTTTTTTACCCGTAAAGACAATCTGGCGGAACATCTTCGAGCTCATGCAGGACAAGTTaagaagaagaaaatgttcCATTGTGAATTTTGCCCGAAAGAGTTCCATGGTTATGCTTTACTAAACATTCACACTCGTACACATACAGGTGAAAAACCATATCCTTGTGACTTGTGCCCTAAACAGTTTCCGTCAAGTGGGGCTATGAAGAAACATCGTCGCATGCATACCGGGGAGAAACCATATAAATGTTCGCAGTGTGACAAACGGTTTGCTGCGAAAGAAACATTAAATCGACATTTGCGTACCCACACTGGAGAGAAACCTCACCAGTGCCAGTTTTGTGGAAAATCCTTCATTCAGGCATCTCAATTAAGGGCACACATTTTCCATCATACTGGGGAAAATGCTTATACATGCCCTCACTGCGGCCGTGCTTTCAATCGAAAACTGCGATTGACCACTCACATCAAATTTATGCATGAAGGAGCTGAGCCTTTACCTTGCCCTGAGTGTGATAAGacatttttcagaaaagaaGACGTTGCTCGTCACATGTTGTCTCACAGTGGAGAAAAGCcCTATATTTGCACCGTTTGCCAAAAAGCATTTTCCATCAATTCCTCTTTGAAGATTCACATGCTAACACACCGCAAGGAGCCACCATGCAGCTGTGACACGTGTGGCCGAGCTTTTATCCGGCAAGACTGTCTGATGAGACATATGCGTGCCAGACATCGTGACGTACTGGAGGATATTATGGCAAGTGCGGAGAAGAAACGATTACAGCAACAACTGCTAAGCGCCGCCACTGATGCGGCAGCCTCTAAAGTTGGCCTGAATGAGAATATCGTATGGAACGAACTTACACTTACTGAATCGATCAAAGAACTTCTGACTTTACTAGTGGATGAGGACTGTTTAAATGATTTTGGTTATCCAGATGCACCAGTCGACAAAGTTTTAGATTCGGTTATTAAAAGGTGTGGTCATAAACCAGCATCAGAAGAGGACTTTGATTATATCGGAAGAATGAGGGAAAACGCTAAGTTGTTGTTTACAGTAGTGATAGATGACGAAGCTGTTAAGGAGCTCTTGAATAACCAAACTGTAGACGAGGTTATTTTGCATGTTTTGCGGCTGGCAAAGAAACAAAATAGCTAA
- Protein Sequence
- MDDPMVVVPVKKEMADIKAEAECTEAVEETIDCTSMGTTEVHTVVLQNIQIHEGGEDLPIILNDFPQNNSDGNLQIATLEEDVIHTYIIDNTEYEHHEVQEIIYEDQGDEEGAIHYVIEEQTEYEENTEPNSEYNDESMDYTYEEENEEAWKRHITVNHGENDPEEDDDPLTFQVCPCCGEPSDSAHTLGDFKCDQCDKLFIQQNCLDRHCSLEHPVGDTYACAECVKTFKTKEQLIDHMRIHPIKSVKCLGCNREFTRKYHLDRHIGQTGCMGLPRKAFDCRVCKRFFTRKDNLAEHLRAHAGQVKKKKMFHCEFCPKEFHGYALLNIHTRTHTGEKPYPCDLCPKQFPSSGAMKKHRRMHTGEKPYKCSQCDKRFAAKETLNRHLRTHTGEKPHQCQFCGKSFIQASQLRAHIFHHTGENAYTCPHCGRAFNRKLRLTTHIKFMHEGAEPLPCPECDKTFFRKEDVARHMLSHSGEKPYICTVCQKAFSINSSLKIHMLTHRKEPPCSCDTCGRAFIRQDCLMRHMRARHRDVLEDIMASAEKKRLQQQLLSAATDAAASKVGLNENIVWNELTLTESIKELLTLLVDEDCLNDFGYPDAPVDKVLDSVIKRCGHKPASEEDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01290595; iTF_01370059; iTF_00886688;
- 90% Identity
- -
- 80% Identity
- -