Basic Information

Insect: Leptura quadrifasciata
Gene Symbol: -
Assembly: GCA_963675555.1
Location: OY776674.1:19606620-19619392[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.6e-06 0.00086 21.7 0.1 2 23 183 205 182 205 0.95

2 13 0.0033 0.6 12.8 2.9 1 23 236 259 236 259 0.94

3 13 8.5e-07 0.00016 24.0 1.9 1 23 265 287 265 287 0.98

4 13 0.00019 0.036 16.6 0.5 2 20 293 311 292 313 0.95

5 13 1.4e-05 0.0025 20.3 1.1 1 23 324 346 324 346 0.97

6 13 0.00023 0.043 16.4 0.4 1 23 356 378 356 378 0.99

7 13 7.5e-06 0.0014 21.1 0.3 1 23 384 406 384 406 0.98

8 13 8.7e-07 0.00016 24.0 1.2 1 23 412 434 412 434 0.99

9 13 1.3e-05 0.0023 20.4 3.6 1 23 440 462 440 462 0.96

10 13 2.2e-05 0.0042 19.6 0.8 1 23 468 491 468 491 0.96

11 13 3.6e-06 0.00067 22.1 0.2 2 23 498 519 497 519 0.96

12 13 1.1e-06 0.0002 23.7 0.5 1 23 525 547 525 547 0.98

13 13 3.6e-05 0.0068 18.9 3.3 2 23 554 576 553 576 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.6e-06	0.00086	21.7	0.1	2	23	183	205	182	205	0.95
2	13	0.0033	0.6	12.8	2.9	1	23	236	259	236	259	0.94
3	13	8.5e-07	0.00016	24.0	1.9	1	23	265	287	265	287	0.98
4	13	0.00019	0.036	16.6	0.5	2	20	293	311	292	313	0.95
5	13	1.4e-05	0.0025	20.3	1.1	1	23	324	346	324	346	0.97
6	13	0.00023	0.043	16.4	0.4	1	23	356	378	356	378	0.99
7	13	7.5e-06	0.0014	21.1	0.3	1	23	384	406	384	406	0.98
8	13	8.7e-07	0.00016	24.0	1.2	1	23	412	434	412	434	0.99
9	13	1.3e-05	0.0023	20.4	3.6	1	23	440	462	440	462	0.96
10	13	2.2e-05	0.0042	19.6	0.8	1	23	468	491	468	491	0.96
11	13	3.6e-06	0.00067	22.1	0.2	2	23	498	519	497	519	0.96
12	13	1.1e-06	0.0002	23.7	0.5	1	23	525	547	525	547	0.98
13	13	3.6e-05	0.0068	18.9	3.3	2	23	554	576	553	576	0.94

Sequence Information

Coding Sequence: ATGGGCGACAACGCGGTGGTAGTACGGGTGAAACATGAATTGGCTGATGTAAAGGCTGAAGTTGAATGTACAGAAACTGTTGAGGAAACTGAGGACTATGACCAGTCAGGCGGCAATGCAGAAGTTCACACAGTTgttcttcaaaatattcaaatacgTGAAGGAGAAGAAGAACTGCCTGTAATCCTCAGTGATTATTCACAACACAACTCTGATGGCAACCTGCAAATTGCTACTTTGGAGGAAGACGTAATTCATACTTATATTATAGATAACACAGAGTATGAACACCATGAAGATCATGAAATAATTTATGCAGAACAAGGGGACGATGATGGCACGGTACATTATGTAATAGAAGAACAAGGAGAATATGAAGAAAGCACTGAACAAAATAGCGAATATAACGATGAGGATTCCATGGAATATGCATATGAAGAAAACGAAGAACTAGTGGACAATCCcccagaagaagaagaagaagatgaggaGGTAGGAGTAGGTGAGATAAACTCAGCAGATATTAAAAGAGAAGAGGAACTTTTGGAGTGTGATATTTgccaaaaagtttttaaaaccgCTGCGGGTTTGAAGCGGCACATTACCGTAAATCACGGTAACAATGACTTGGAGGATGATCCTCTTACTTTCCAGGTCTGCCCCTGCTGTGGGGAGCCTTCTGATTCGGCCCATACCTTGGGCGACTTCAAATGTGACCaatgtgacaagttatttataCAACAAAACTGCCTGGATCGCCATCGTAGTCTGGAACATCCTGATGGCGATAATTATGCCTGTGCCGAGTGCAAGAAATGTTTCAAAACGAAGGAACAACTCGTTGATCATATGAGAGTACATCCCATTAAGTCTGTGAAATGTCTCGGCTGTAACCGAGAATTTACTAGAAAGTATCATCTTGATAGACATATAGGGCAGACTGGGTGCATGGGACTACCTAGGAAGGCATTTGATTGCCGGGTCTGCAAACGTTTTTTCACCCGTAAGGACAATCTGGCAGAACATCTTAGGGCTCATGCAGGACaagctaaaaagaaaaaaatttacagcTGTGGATTCTGCGGCAAAGAATTTCAAGGTTATGCTTTGCTTAACATTCACACCCGTACCCATACAGGAGAGAAACCGTATCCTTGTGACTTGTGCCCTAAAAAATTTCCTTCTAGTGGTGCCATGAAGAAACATCGCCGCATGCACACTGGAGAGAAACCATATAGGTGTGAACAGtgCGACAAACGGTTTGCCGCGAAAGAAACGTTAAATCGCCATTTGCGTACTCACACCGGAGAGAAGCCGCACACTTGTCAGTTTTGTGGAAAGTCGTTCATCCAGGCGTCTCAATTGAGGGCACATATTTTTCATCATACCGGTGAAAATGCCTATACGTGTCCTGTCTGTGGCCGGGCTTTCAATCGAAAGCTGCGATTGACTACCCACATCAAATTCATGCATGAGGGAGCGGAGCCTCTACCTTGTCCGGAATGTGATAAGACATTTTTCAGAAAAGAAGATGTCGCGAGGCACATGCTGTCTCACAGTGGAGAGAGacCCTTCAGTTGCACTGTTTGCCAGAAAGCATTCGCCGTCAAATCTTCTTTAAAGATCCACATGTTGACCCACCGCAAGGAGCCGCCGTGCAGCTGTGACACGTGTGGCCGTGCATTTATCCGCCAAGACTGTCTCATGCGGCACATCCGTGCCAGACATCGTGACGTGCTAGAAGATATCATGGCGAGTGCTGAAAAGAAGCGTTTGCAGCAACAGTTGCTGAGCGCCGCCACCGACGCAGCCGCCTCCAAGGTCGTCCTACACGAGAATGTTGTGTGGAACGAACTAACGCTTACTGAATCGATCAAAGAACTTCTGACTTTGTTAGTGGATGAAGAATGCTTACAAGAGTTTGGTTATCCAGAGGCGCCAGTGGACAAGGTTTTGGACTCGGTTATTAAAAGGTGTGGCCACAGACCAGCTTCAGAAGAGGACTTTGATTATATTGGGAGAATGAGGGAGAACGCCAAGTTGCTGTTTACAGTCGTGATAGATGACGAGGCTGTGAAGGAGCTCCTGAACAATCAAACTGTAGACGAGGTTATTCTGCACGTTTTGCGATTGGCTAAGAAACAGAACAGCTAA
Protein Sequence: MGDNAVVVRVKHELADVKAEVECTETVEETEDYDQSGGNAEVHTVVLQNIQIREGEEELPVILSDYSQHNSDGNLQIATLEEDVIHTYIIDNTEYEHHEDHEIIYAEQGDDDGTVHYVIEEQGEYEESTEQNSEYNDEDSMEYAYEENEELVDNPPEEEEEDEEVGVGEINSADIKREEELLECDICQKVFKTAAGLKRHITVNHGNNDLEDDPLTFQVCPCCGEPSDSAHTLGDFKCDQCDKLFIQQNCLDRHRSLEHPDGDNYACAECKKCFKTKEQLVDHMRVHPIKSVKCLGCNREFTRKYHLDRHIGQTGCMGLPRKAFDCRVCKRFFTRKDNLAEHLRAHAGQAKKKKIYSCGFCGKEFQGYALLNIHTRTHTGEKPYPCDLCPKKFPSSGAMKKHRRMHTGEKPYRCEQCDKRFAAKETLNRHLRTHTGEKPHTCQFCGKSFIQASQLRAHIFHHTGENAYTCPVCGRAFNRKLRLTTHIKFMHEGAEPLPCPECDKTFFRKEDVARHMLSHSGERPFSCTVCQKAFAVKSSLKIHMLTHRKEPPCSCDTCGRAFIRQDCLMRHIRARHRDVLEDIMASAEKKRLQQQLLSAATDAAASKVVLHENVVWNELTLTESIKELLTLLVDEECLQEFGYPEAPVDKVLDSVIKRCGHRPASEEDFDYIGRMRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQNS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01296716;
90% Identity: iTF_01370059;
80% Identity: -