Rbic067970.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- lrrfip2
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005661.1:1000899-1033711[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-96 3e-91 307.9 16.4 1 300 248 541 248 541 0.89 2 2 0.08 6.2e+03 -1.7 3.1 7 232 573 609 542 616 0.44
Sequence Information
- Coding Sequence
- ATGACTACAGCAGAAAAGTTAAATGAAATCAGTTTCGAAATCACAGACGAATGGTTAGGGACGTTCCTGTTAGCCGGTTTGTTCGAAGAATTTAAACCAATGATTATGGCAATAGAAGACTCAGGCTCATCATTATCTGCCGACAGTATAAAAACGAGGTTATTGCAAGAAgTCCCCCACGGAATGTCTAAGGCAATAAAACTCCAGAAGAAGCGTGGACTGGTAGAAAAGTGGTTATCAGTAACCTACGCGTATTTGGCTACAAAGCATATTTACatattccaaagaaaaaaacgtaaaaagcTGGACAATAAATCAGAAGAGTGCATCTTTGTGGGCTGCAGTTTTCAGACCAAAGGATATCGTTTGTATCAACCGTCAAAACAAACGCATATCAGTAGAGATGTTGTATTTGATGAAACTAGCATCAAGGAGAAAGATAATGGTATCCGTGTAGATTATACTTTTAATGAAGGCATTCCGGATGAAGTGGGAGATAATATTGATGATGAGTTTGATAACAGTATGCACTCTGGTTTGAAGGATGCATCATCGTCTCATGAAGATGATGTGAATGCACGGGCTCCGTTTGAAGATGAAGTTTCAAATCAATTGAATGTTGGAGATAATATTTATGTCCCGCAAAATGTTCGCCGATCTGAAAGAACGCCAAAACCAAAGAAAATGGATcagtataatttatataatgccaTACATTGCAATTCTAACGAAAGGTTTACTgcCGAGGCGAGACTTTGGGCCAAAAGACAGGCAAGAGCAGAGGCGAGGGAGATACGTATGCGTGAACTGGAACGTCAGCAGAAAGAACAAGAGGAGAATGCAGATAGACAATTTGACATGCTGGCTGAACCCTTGGCCAGAACATCCAGGAGCGTTACTGCTGGTAGCCGATATTTGTCCAGTAGGCGAAGTTCTGAGGATTCCCTGGAAGATGGGGGTAGTCTTAGGGAATTACGACATGAACTCAAGGAGGTTGAAGAAAAATTCCGAAAGGCAATGATTGCCAATGCTCAACTTGACAATGACAAAGCGGCGCAGACGTACCAATTAGAATTACTAAAAGATAGATTAGAAGAATTAGAAGAAGAACATTCTCAACTAAAAAGGGAGCATCGAGAAAAATGCAGGGAGCACGATCAGCTGAAGAGGCTGTGTACCAAACTGAAAGACGACCTGGCTGTGACAAAAGCTGAGCTTGATGAGAGAGACCGGTTAATCACAGAAAAGGGACTGGTTATCGTTGGCGAAGAGGTTCCACCTGATGAGGATGGTACGATACAACCTCCTAAGAAAGCCCTTGTTAGTCTAGAAAATGCCCAGTTGCTGGAAAGTGCAGGAGATGGAAGTCTTGGACGGCATACACGATACAGTTTACCGGAAGGCAGGCCTTCTGGTTTGCAAACCAGAAGGCAAACCGCATCGTTAGTGGTTATATTGGCCAGAAGACCTGGCCTGAACTCTCGGCCATCCGAAAAACTGCCAGCACTTGAAGTCTTGCCTGCCGATTCGCCTTCGCTTATACAAGTCGGACCATgggAAGCAAGTAAACAGCTTGGGGACTACAAATTTAGGGCTCAAAAAGCTGAGCAAGACGTAGCAACATTACAAGCAGCAGTCGCAAGGCTGGAAAGTCAAGTTATACGGTATAAAACAGCAGCAGAAGTATCAGAACAGTCGGAAGAGGCACTGAAAgccgaaaaaagaaaattacaaagAGAGgCGAGAGATGCGCTAAGCAGAGCAGAAGAGCTGGAGACGTCAAACACCCATCTACTTAAAAGATTGGATAAGTTAAAAAATGCAAAGTCAGCATTGCTGAAGGAACTTTGA
- Protein Sequence
- MTTAEKLNEISFEITDEWLGTFLLAGLFEEFKPMIMAIEDSGSSLSADSIKTRLLQEVPHGMSKAIKLQKKRGLVEKWLSVTYAYLATKHIYIFQRKKRKKLDNKSEECIFVGCSFQTKGYRLYQPSKQTHISRDVVFDETSIKEKDNGIRVDYTFNEGIPDEVGDNIDDEFDNSMHSGLKDASSSHEDDVNARAPFEDEVSNQLNVGDNIYVPQNVRRSERTPKPKKMDQYNLYNAIHCNSNERFTAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPLARTSRSVTAGSRYLSSRRSSEDSLEDGGSLRELRHELKEVEEKFRKAMIANAQLDNDKAAQTYQLELLKDRLEELEEEHSQLKREHREKCREHDQLKRLCTKLKDDLAVTKAELDERDRLITEKGLVIVGEEVPPDEDGTIQPPKKALVSLENAQLLESAGDGSLGRHTRYSLPEGRPSGLQTRRQTASLVVILARRPGLNSRPSEKLPALEVLPADSPSLIQVGPWEASKQLGDYKFRAQKAEQDVATLQAAVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREARDALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -