Rbic015075.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- clz9_28
- Assembly
- GCA_029963845.1
- Location
- JANEYF010001281.1:2213730-2215295[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-07 0.00014 23.5 0.0 3 40 17 54 15 59 0.81
Sequence Information
- Coding Sequence
- ATGCCTCGAAACTACGTCAGAAAAACGAACAGGCAAAGTTGGGACAAGGAAAATATGAAGAAAGTCATCTCGGAGGTGGTGAATAATCGTTCTAGTGTTAATGCTGCTGCAAAGAAATACGACATACCGGAGCCTACTTTAAGGAGATATTTGAAGAAAGGGGGTCGCACCACAGAGCTTGAGGAACATGAATTCCCCGTAAATGCAGGGAGGTATAAAAAAACCTTCTCAACCGGACAGATAGAAGAGCTTAAGCAATACATAGTTGATATTGATAGAAGAGCCTTTGGGCTTACAAAATCTCAGTTCGGCCGTTTATGTTTTGATTTTGCTGAAAGTAAAGGCATTACCCACAAATTCAACAAAGATAAGAGAGCTGCTGGGAGAGATTTCATTGAAGCATTTATGAAAGAAAGCAAACTCACACTGAGGAAGCCTGAAGCAACTTCAGTTGCACGATTAATGGCGTTCAACAAAATCAATGTTGGCAAATTCTTTGATGTATTAAAGGATTTGAGAATCGCACATTCTTTTCAAGCTGCAAACATATATAATGCAGATGAAACAGGATTTTCAACAGTACCAACGAGGACTCCAAAGGTGATTTCACCGATCGGAAATCGTAGAGTAATAAAGTTGAAATCTGCTGAACGAGGTACCACAGTCACTAGCGTGTGCATCATAAGTGCTGCTGGAAATTTTGTTCCCCCTTTCTTCATTTTTCCTAGAAAGAGGATGAATCCTTCATTTATGGTTGGCGCACCTCCAGGTTCAGAAGGAGTTGCACATGAATCTGGTTGGATGACTGCtgaaaagtttataaattatttgcatCACTTTGCAAAATTTGCTCATCCCAGGAAAGACAACCCTGTTCTCATGATTATGGATAACCATGCTTCACATGTAACCTTGGAGGCAATTCAGTACTGTAGagataacttcatttttttgcTTGGGTTACCAGCTCATACTAGCCATAAACTACAACCATTAGATGTGGCCTTTTATAGCCCATTGAAAAATGCATATAATTCATGTTGTGATGATTTTATGGTCAACAACCCCGGCTGTACCATATCAATTAGGGAGTTAGCTAGCATAGCCGGCAAAGCATACCTTCAGGTAGCCAATGCAAGAACGGCTATAAAAGCCTTTGAAGCTACAGGGATTGAGCCTTTCAACCAAGCCATATTTAATGAAGAAGATTTTGCGCCTGCTCAAACCACAGATATGCCTATTCAAACGGTTGAAAGCGATGCTTTTCCAACGTCTGCTGAGCCTCAAGTAATTAGGTCAACAGACATACCTAGTGAATTGGTTGAAAATGTCACTGTTTCAACGTCTGCTGACTCTCAAGCAATTACGTCGACAGACACACCTAGTGAACTGGTTGCGACTGTTTCAACATCTGCTGAGCCTCAACCGACTTCATCAGGCTTACCACCACTGCCAACAGCTCGAACAAACACATCAAGAAgaccaagaaaaaaaattaccttccATGCATCTTACGAGCACACCAGTAAAAGAAGCTTTGGTGGAGAGAAAAATGGAAAAGGATGA
- Protein Sequence
- MPRNYVRKTNRQSWDKENMKKVISEVVNNRSSVNAAAKKYDIPEPTLRRYLKKGGRTTELEEHEFPVNAGRYKKTFSTGQIEELKQYIVDIDRRAFGLTKSQFGRLCFDFAESKGITHKFNKDKRAAGRDFIEAFMKESKLTLRKPEATSVARLMAFNKINVGKFFDVLKDLRIAHSFQAANIYNADETGFSTVPTRTPKVISPIGNRRVIKLKSAERGTTVTSVCIISAAGNFVPPFFIFPRKRMNPSFMVGAPPGSEGVAHESGWMTAEKFINYLHHFAKFAHPRKDNPVLMIMDNHASHVTLEAIQYCRDNFIFLLGLPAHTSHKLQPLDVAFYSPLKNAYNSCCDDFMVNNPGCTISIRELASIAGKAYLQVANARTAIKAFEATGIEPFNQAIFNEEDFAPAQTTDMPIQTVESDAFPTSAEPQVIRSTDIPSELVENVTVSTSADSQAITSTDTPSELVATVSTSAEPQPTSSGLPPLPTARTNTSRRPRKKITFHASYEHTSKRSFGGEKNGKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295985;
- 90% Identity
- iTF_01295985;
- 80% Identity
- -