Rbic063291.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- clz9
- Assembly
- GCA_029963845.1
- Location
- JANEYF010005296.1:219320-221093[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-09 7.5e-07 30.8 0.0 2 40 16 54 15 58 0.90
Sequence Information
- Coding Sequence
- ATGCCTCGAAACTACGCCAGAAAAACGAACAGGCAAAGTTGGGACAAGGAAAATATGAAGAAAGCCATCTCGGAGGTGGTGAATAATCGTTCTAGTGTTAATGCTGCTGCAAAGAAATACGACATACCGGAGCCTACTTTGAGGAGATATTTGAAGAAAGGGGGTCGCACCAGGGAGTTTGAGGAACATGAATTCCCCGTAAATGCAGGGagAAGAGCCTTTGGGCTTACAAAATCTCAGTTCGGCCGTTTATGTTTTGATTTTGCTGAAAGTAAAGGCATTACCCACAAATTCATCAAAGAGAAGAGAGCTGCTGGGAGAGATTTCATTGAAGCATTTATGAAAGAAAGCAAACTCACACTGAGGAAGCCTGAAGCAACTTCAGTTGCGTTCAACAAAATCAATGTTGGAAAATTCTTTGATGTATTAAAGGATTTGAGAATCGCACATTCTTTTCAAGCTGCAAACATATATAATGCAGATGAAACAGGATTTTCAACAGTACCAACGAGGACTCCAAAGGTAATTTCACCGATCGGAAATCGTAGAGTAATAAAGTTGAAATCTGCTGAACGAGGTACCACAGTCACTAGCGTGTGCACCATAGGTGCTGCTGGAAATTTTGTTCCCCCTTTCTTCATTTTTCCTAGAAAGAGGATGAATCCTTCATTTATGGTTGGCGCACCTCCAGGTTCAGAAGAAGTTGCACATGATTCTGGTTGGATTACTGCtgaaaagtttataaattatttgcatCACTTTGCAAAATTTGCTCATCCCAGGAAAGACAACCCTGTTCTCATGATTATGGATAACCATGCTTCACATGTAACCTTGGAGGCAATTCAGTACTGTAGagataacttcatttttttgcTTGGGTTACCAGCTCATACTAGTCATAAACTACAACTATTAGATGTGGCCTTTTATAGCCCATTGAAAAATGCATATAATTCATGTTGTGATGATTTTATGGTCAACAACCCCGGCTGTAATGTATCAATTAGGGAGTTAGCTAGCATAGCCGGCAAAGCATACCTTCAGGTAGCCAATGCAAGAACGGCTATAAAAGCCTTTGAAGCTACAGGGATTGAGCTTTTCAACCAAgccatatttaatgaaaaagatTTTGCGCCTGCTCAAACCACATATATGCCTATTGAAACGGTTGAAAGCGATGCTTTTCCAACGTCTGCTGAGCCTCAAGTAATTAGGTCAACAGACATACCTAGTGAATTGGTTGAAAATGTCACTGTTTCAACGTCTGCTGACTCTCAAGCAATTACGTCGACAGACACACCTAGTGAACTGGTTGTGACTGTTTCAACATCTGCTGAGCCTCAACCGACTTCATCAGGCTTACCACCACTGCCAACAGCTCGAACAAACACATCAAGAAgaccaagaaaaaaattatcttccATGCATCTTACGAGCACACCAGTAAAAGAAGCTTTGGTGGAGAGAAAAATGGAAAAGGATGAAAAGGAAGAGAAGCGCAAACAGAGGCTGatgaataaagataaaaaaaaccaaaacacaaaaaatgaaaaaagtagctcaacaaaaaaaaaaaaaacagtgcgtCAAGTATTCTCCTCATCTGACGATTCAGATTCAATTGAAGTGCAATACGTAAACACTGATGATGATATAGACCCTGAAAACGAGGAAGAACAGGACTGCATAATTTGTGGTGAATAA
- Protein Sequence
- MPRNYARKTNRQSWDKENMKKAISEVVNNRSSVNAAAKKYDIPEPTLRRYLKKGGRTREFEEHEFPVNAGRRAFGLTKSQFGRLCFDFAESKGITHKFIKEKRAAGRDFIEAFMKESKLTLRKPEATSVAFNKINVGKFFDVLKDLRIAHSFQAANIYNADETGFSTVPTRTPKVISPIGNRRVIKLKSAERGTTVTSVCTIGAAGNFVPPFFIFPRKRMNPSFMVGAPPGSEEVAHDSGWITAEKFINYLHHFAKFAHPRKDNPVLMIMDNHASHVTLEAIQYCRDNFIFLLGLPAHTSHKLQLLDVAFYSPLKNAYNSCCDDFMVNNPGCNVSIRELASIAGKAYLQVANARTAIKAFEATGIELFNQAIFNEKDFAPAQTTYMPIETVESDAFPTSAEPQVIRSTDIPSELVENVTVSTSADSQAITSTDTPSELVVTVSTSAEPQPTSSGLPPLPTARTNTSRRPRKKLSSMHLTSTPVKEALVERKMEKDEKEEKRKQRLMNKDKKNQNTKNEKSSSTKKKKTVRQVFSSSDDSDSIEVQYVNTDDDIDPENEEEQDCIICGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01295983; iTF_01296109; iTF_01296048; iTF_01295995; iTF_01296083;
- 90% Identity
- iTF_01295995; iTF_01296109; iTF_01295983; iTF_01296048;
- 80% Identity
- -