Rbic008752.1
Basic Information
- Insect
- Rhamnusium bicolor
- Gene Symbol
- Mblk-1
- Assembly
- GCA_029963845.1
- Location
- JANEYF010000753.1:1723743-1727128[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-16 3e-14 54.5 0.0 1 44 11 55 11 56 0.94 2 2 1.9e-17 4.6e-15 57.1 0.0 1 43 364 407 364 409 0.95
Sequence Information
- Coding Sequence
- ATGTCCGCAGTTGCTGGCAGAAGGACCTACACCGAGGACGAACTGCAAGCAGCCTTGAGAGACATCCAGTCAGGTAAACTTGGAACGAGAAGGGCCGCCGTCATTTACGGGATTCCTCGATCGACCCTACGGAACAAAGTCTACAAACTTGCCTTAGAACGTGAAAGGGAATCGCACCTTAACAGTTCCACTCCCTTGAAATTAGAGGAAGAGGAAGCCATGGACGATGAAAAAGAGCTCTCAGGCGCCGAAGAGGAAAAAGAAGTAGAAAAGGCGTTGCAAGCTCCTCTCTTATCCATGGCGGATCTCTTCAGATTTACAGGCAGGGATCCACATCCAGACGCTCTCAAACATCTCCTTCAAAAGGGCAAAGAAGGCCAGGATGTTTGGGCGGGCATGGACCACAGTGAAGTAGGGCCATATATCCAAAATATACTCCTAGCTTCTCAGAACCTATTAGCCAACCAAAAACCGCCGGACGGTTCAGTATTAAACCACATGATACCGGAATTCGTAAAGCGAATGATGGCCGAAGAgcacttattaaaaatacaaaacaataatgGTGATAGTGAAAAGCTTATAAGGCCGAGCCCGAGCAATTCGGTTATTACGAAAGTGGACAAACCTAAGTCAGAGTCAGACATGGAAACGGAGGACTCGCCATCGAATGTGATACTGAAAATTCCGTCCTTTAGGCCGACGTCGAGTAAAAACGGTTGCGACATGTTTAGGAGTGCGGTGGAACCCACAGGTAGTATGATCTCACCGCCGGTCACTAGTGAATCCGGATCTCCCCCTATCTTACCCACTAAAGGGCTTATTATTAAGGACGTCAAAGACGTTATAGCTCAAAGTATCAGTCAAAAATTTCAACAGACTCTAGAACCGAGAAGGCCCATAATGGACATAGATTTCAAGAGAGGCGGGTTTACTCCACCTCTCGGTTCTGGTATATCTGTCATAAAAACTCAGCAAGATGTTAATAGATCGTACCAACCTCCCAAGCCTCAACAAAATACAAGCAGCGGTAGTTCGTCGTCTGGAGGTAAAGgTACTAGACCAAAAAGAGGTAAATATAGGAACTATGACCGTGATAGCTTAGTAGAAGCAGTTCGAGCAGTACAAAGAGGTGAAATGTCGGTACACAGAGCAGGAAGTTACTATGGTGTGCCTCATTCCACCCTAGAATATAAAGTTAAAGAAAGACATTTAATGAGGCCACGGAAACGTGACCCAAAGCCCAATCCAGTTGATGAAAAAATAGCTAGCCTCAAACAAAACGATATTTTACGTAATTCACAAATCGCACAGGAGAAGATGAAGCCCGTCATGAAACCACCTCAAAAATTCCCACCAACCTCGCCAAACGATTATGCAAGAAATCCTACTTCGCCCTTTTCCGCCCCCAACCCAGAGTTCTTTGCCTCGCAAATGATGCAAAAACTGCAGGAAGAATCTTCAAGAACGCTGGGGAGTTCTACGCAAACCATCCCAGGCCCAGGAAACTCACCAGCTTTGGCCAAAAATGCCCGACAAATGGCAGAGTCACTCTTGGAAGGTAGTGGTTCAAATGGATCTTTCCTTGATGGTATAATAAGATCCAGTTTGGAATCTGGTGTGCCTGTCACTGAAGAGAAGGCGCCGAAGGAAGAAAATAATGTATCACCTGAAAATATGTCCAATAAAGCCCTTTTAGATCAACTCTGTCGAAACGGTAGAATCACACCTCTTTCCAAACCAGCCATGACAGAAGCTAACAGTTCTGGGGATGAGTCCTATCGGAAAGGATGCAGTCCCCTGAATTTTGCAACAGGTGGTATGTCCCAGGAAGACAACAATGATGATGATTCATCGTCCAGGTACGACAAAGACAGCTCCGAAGTCCACACAATAGAGCTCTCAAACGATTCAAATGCATCGAGTGAGAGGAAAGTGAACGAAGAGGAGCGGAAACCTCCCAGAATATACTTAAACCAAGATCTGGCCAAGCCAGAAAACTTGAAACCTGAAATGTTGGTGCGCTTTCGAGATGTCCTGACCGATATTGATCACAACGGCATGAACGAAAGTGCGCCAAGCAGTGCCTCTGATAACGACGCGCCTCAAGACTGA
- Protein Sequence
- MSAVAGRRTYTEDELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLALERERESHLNSSTPLKLEEEEAMDDEKELSGAEEEKEVEKALQAPLLSMADLFRFTGRDPHPDALKHLLQKGKEGQDVWAGMDHSEVGPYIQNILLASQNLLANQKPPDGSVLNHMIPEFVKRMMAEEHLLKIQNNNGDSEKLIRPSPSNSVITKVDKPKSESDMETEDSPSNVILKIPSFRPTSSKNGCDMFRSAVEPTGSMISPPVTSESGSPPILPTKGLIIKDVKDVIAQSISQKFQQTLEPRRPIMDIDFKRGGFTPPLGSGISVIKTQQDVNRSYQPPKPQQNTSSGSSSSGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKRDPKPNPVDEKIASLKQNDILRNSQIAQEKMKPVMKPPQKFPPTSPNDYARNPTSPFSAPNPEFFASQMMQKLQEESSRTLGSSTQTIPGPGNSPALAKNARQMAESLLEGSGSNGSFLDGIIRSSLESGVPVTEEKAPKEENNVSPENMSNKALLDQLCRNGRITPLSKPAMTEANSSGDESYRKGCSPLNFATGGMSQEDNNDDDSSSRYDKDSSEVHTIELSNDSNASSERKVNEEERKPPRIYLNQDLAKPENLKPEMLVRFRDVLTDIDHNGMNESAPSSASDNDAPQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01310255;
- 90% Identity
- iTF_00885811; iTF_01289682;
- 80% Identity
- -