Basic Information

Insect: Rhagophthalmus giganteus
Gene Symbol: wdn
Assembly: GCA_036326145.1
Location: JARFJA010000088.1:28954594-28960495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.052 4.9 8.6 0.2 2 21 210 229 209 230 0.92

2 10 5 4.7e+02 2.4 6.5 1 19 238 256 238 260 0.90

3 10 4.6e-06 0.00043 21.4 0.7 1 23 266 289 266 289 0.97

4 10 4.7e-07 4.4e-05 24.5 0.2 1 23 295 317 295 317 0.97

5 10 5.1e-05 0.0047 18.1 0.2 1 23 325 347 325 347 0.98

6 10 1.1e-06 9.9e-05 23.4 1.0 1 23 353 375 353 375 0.97

7 10 0.00011 0.01 17.1 6.2 1 23 381 403 381 403 0.95

8 10 0.00092 0.086 14.1 3.6 1 23 409 431 409 431 0.97

9 10 0.0037 0.35 12.2 2.6 1 23 437 459 437 459 0.98

10 10 4.5e-05 0.0042 18.2 2.1 1 23 465 488 465 488 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.052	4.9	8.6	0.2	2	21	210	229	209	230	0.92
2	10	5	4.7e+02	2.4	6.5	1	19	238	256	238	260	0.90
3	10	4.6e-06	0.00043	21.4	0.7	1	23	266	289	266	289	0.97
4	10	4.7e-07	4.4e-05	24.5	0.2	1	23	295	317	295	317	0.97
5	10	5.1e-05	0.0047	18.1	0.2	1	23	325	347	325	347	0.98
6	10	1.1e-06	9.9e-05	23.4	1.0	1	23	353	375	353	375	0.97
7	10	0.00011	0.01	17.1	6.2	1	23	381	403	381	403	0.95
8	10	0.00092	0.086	14.1	3.6	1	23	409	431	409	431	0.97
9	10	0.0037	0.35	12.2	2.6	1	23	437	459	437	459	0.98
10	10	4.5e-05	0.0042	18.2	2.1	1	23	465	488	465	488	0.97

Sequence Information

Coding Sequence: ATGAGTACTAGTAATTTTCTACAGTGGTTTGAAGAACAGCTGTTAAAGCCCTTAGAAGAACCATCCTTGATCCTCATGGATAATGCATCTTATCACAGTAGTTTGCTCGACATGCAATCTACAACGgAAGAACTGTCCGAATTTAATTTAGCAGAATGCGAAAATCtgataaaaaatgattttcataGTGACGATGAATGTCTCAATGACTTAGAACTACCTTTGAGTCCAACAAGTGCTTCTAACGAAACCTGTGAAGTTTTATCGAAACAAAATGTTACTCCAAGAAGAAGTAGACGTAAAGCGTTGCAACCACAAAAAGCGGTACACTCGGAAATTAGTCAAAGCGGTTCCTTATGTAATAGTTCGGAATGTTCCCAAGACGCTTCAGAAAATAcgttcttaaaattaataggcCATGAAAGTATGATTCTTACAAGTATTAAAACTGATTTGTTTATGTCCGATACGGAGAATGATATAGAAATACCGGACGGTGAAGATTTACTACAGGACATAGAtgaagaaaatattttcaaaggGCTACAAGAAGAAACAAatgGTCAAaagataaatgaaaaaataatagataatgtAAAGGAAGAGTGGCGGTCACATTGGGGAGTTAAATGTAATATGTGCGAACAGGTTTTCCCGTATAAATTAGATTTCGACAAGCATTATCTTAGTAGCTATGGAATTCCTCCGGTATATACCTGTTCGTTTTGTAATAAGACTGCCGAAAAATATTCTACGTTTAGATCTCACTGTTATCGACATATAACTGAAGGAAGATATAAatgCAACGAATGTACGAAGGGATTTAGTTTACAAAGTATGTTGCAAGTACATATTCTTTCAAAACATACAAAAGCTAAACCATTTGCATGCGAAGAGTGCGGTAAAAGTTTCGTTACAAAACCTGGTCTTAGAATACacattaaaaaacataaaacggAGGTTAAAGAAGATTATCCGTGTGTTGAATGTGGAAAAGTGTTACACACGAGGGGAGGTCTAACGTCGCATATGAATGTTCACAGATTAGGAAGACGATTTATGTGCGATGTATGTGGTAAAACATTTACTCAGAAAGTAAATATGCAACAACATGTTAAACAACATACTGGTGATAAACCACATACCTGTGACACTTGtggaaaaacttttgcAGAAAAGTCTCATCTTGCGAGACATCATAGTTTTCATAGTAATATAAGACCTTTTAAATGTAACGTATGCCAAAAAATGTATAAGACTGAAAGATGTTTAAAAGTTCATAGTTTAGTGCATGCAGCAGCAAGGCCCTTTGTGTGTGCGTACTGTAACAAAGGATTCCTTAGTAGTACTAAATTGAAGcAACATCATAATATACACACTGGTGAAAGACCTTATGCGTGTAAATATTGTGAACGCACATTTACAAATTATCCAAATTGGTTGAAGCATACTCGAAGAAGACATAAAGTAGATCACAAAACAGGCGAAGATCTAACACCAAAAGTTCCTAAAACGGAATCTGCTTCTAATAGTGTACCTAACGCAGAATTTCCACAGTCTTCTGAGAATCCAGATCCTTTAATGGTggattttattacttttagtAAAGCCGATGAACTGTTGTTGCAACagggtttaattaatttgccaACTAATTTGGAAGAACGGTTTATATTTCCACAACAGTTAGATTTACTAGCTGgtaCTTCAAATAATGCAGGTTTGATCAGTCCATATTTACAAATGCAGTTACCAGGACATCAAAATGGTATAACGCAATCTATGCAAATGTCAAACCCTCCATTTAATGACTTGCTGCATTCATCGTTCATGCCACATTCGCTCCCTTGTGACTGA
Protein Sequence: MSTSNFLQWFEEQLLKPLEEPSLILMDNASYHSSLLDMQSTTEELSEFNLAECENLIKNDFHSDDECLNDLELPLSPTSASNETCEVLSKQNVTPRRSRRKALQPQKAVHSEISQSGSLCNSSECSQDASENTFLKLIGHESMILTSIKTDLFMSDTENDIEIPDGEDLLQDIDEENIFKGLQEETNGQKINEKIIDNVKEEWRSHWGVKCNMCEQVFPYKLDFDKHYLSSYGIPPVYTCSFCNKTAEKYSTFRSHCYRHITEGRYKCNECTKGFSLQSMLQVHILSKHTKAKPFACEECGKSFVTKPGLRIHIKKHKTEVKEDYPCVECGKVLHTRGGLTSHMNVHRLGRRFMCDVCGKTFTQKVNMQQHVKQHTGDKPHTCDTCGKTFAEKSHLARHHSFHSNIRPFKCNVCQKMYKTERCLKVHSLVHAAARPFVCAYCNKGFLSSTKLKQHHNIHTGERPYACKYCERTFTNYPNWLKHTRRRHKVDHKTGEDLTPKVPKTESASNSVPNAEFPQSSENPDPLMVDFITFSKADELLLQQGLINLPTNLEERFIFPQQLDLLAGTSNNAGLISPYLQMQLPGHQNGITQSMQMSNPPFNDLLHSSFMPHSLPCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00789645; iTF_00399841; iTF_00978705; iTF_00838875;
90% Identity: -
80% Identity: -