Rgig026572.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- -
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000093.1:15047217-15047573[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-08 5.8e-06 26.7 0.0 2 42 17 57 16 60 0.86
Sequence Information
- Coding Sequence
- ATGTCTACTAAATTTAAGGGATCAACAACTAATAGAGGTAAAtgggacgaaaataaaatgaaaacagcaGTGAAATGTGTCAAAGAAGGCAAGTTATCAATAAGACTATCTGCAGAAAGGTATGATATGCCAAGAAGTTCCCTTCAGGACCGTCTAAAAGCAGTGAATAGTCACAAAGAGATCACGTTTCGTCCAAAGTTAGGACGATTTGAACCCACGTTTTCTGAGAACTTTTCTAAGCAACTGTATAATCACGTTAAAGAACTAGACAATCGTTTAATGCCCCTGACTAAAGACctagaggaaaaacaaaaaggtagaggtggcaaaaaattgaaaacaacgacAACTATTTAA
- Protein Sequence
- MSTKFKGSTTNRGKWDENKMKTAVKCVKEGKLSIRLSAERYDMPRSSLQDRLKAVNSHKEITFRPKLGRFEPTFSENFSKQLYNHVKELDNRLMPLTKDLEEKQKGRGGKKLKTTTTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294984; iTF_01294957; iTF_01295021; iTF_01295025; iTF_01294995; iTF_01295029; iTF_01294972; iTF_01294973; iTF_01294974;
- 90% Identity
- iTF_01294984;
- 80% Identity
- -