Basic Information

Gene Symbol
-
Assembly
GCA_036326145.1
Location
JARFJA010000036.1:17014084-17014437[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.1e-09 5.4e-07 30.0 0.0 2 43 16 57 15 59 0.90

Sequence Information

Coding Sequence
atgtctaaatttaagggaccaacaactaatagaggtaaatgggacgaaaataaaatgaaaacagcaGTGAAATGTGTCAAAGAAGGCAAGTTATCAATAAGACTATCTGCAGAAAGGTATGATGTGCCAAGAAGTTCCCTTCAGGACTGTCTAAAAGCAGTGAATAGTCACAAAGAGATCACGCTTCGTCCAAAGTTAAGACGATTTCAACCCACGTTTTCTGAGAACTTTTCTAAGCAACTGTATAATCACGTTAAAGAACTAGACAATCGTTTAATGCTCCTGACTAAAGACctagaggaaaaacaaaaaggtagaggtggcaaaaaattgaaaacaacgacaactatttaa
Protein Sequence
MSKFKGPTTNRGKWDENKMKTAVKCVKEGKLSIRLSAERYDVPRSSLQDCLKAVNSHKEITLRPKLRRFQPTFSENFSKQLYNHVKELDNRLMLLTKDLEEKQKGRGGKKLKTTTTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2