Rgig022325.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- clz9
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000084.1:71395-72960[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.4e-12 7.2e-10 39.2 0.0 5 39 1 35 1 38 0.97
Sequence Information
- Coding Sequence
- ATGAATGAAGCCATTGCTCAGGTTAAATCTGGTGACCTCTCATTAAGAAAAGCTGCATTGAATTTTGGCATTCCAAAATCTACTTTGTCAGAGCATGTTCGTGGCTTAAGCCAAGGTCAAGTTGGACATCCAACAATTTTTTCAGTTAAAGAAGAAAAAGTTTTAGTTGAAGTTGCCCAAGTTTTGTCAAATCATGGACTACCGCCAACTAAAATAGATTTCAGACGACTTGCAAAAGGACTTTTGGATGACTCAAAACGAAAAACCCACTTTCCTGCAAATTTTCCTACAAAAAAATGGTTGAAATGTTTCCTAAAGCGTTGGAAAAATGAAGTATCACTGAGAGTCCCTGAATGTCTTGGCTTAAATAGAGCAAGGGCGCTTTCTCCTGAAACAATTCAACGATTTTTTCAGCTTTATACACAAATTCTTCAAGATTTTCAACTACAAAATAAACCTGCCTGCATATGGAATTGTGATGAAAGTGGTTTTGGAACCGATCCTGGGTCTACAAAAGTTTTGGCCAAAAGAGGTTTACACACTGCGAACCTTGTAACTGGTTCAACATTACGTCAAAGTTACACTGTTTTGGCATGCGGTAATGCAACAGGACAAGTTGTTCCTCCATTGATTTTGTACAAAGGAAAGCATTTGTACTCAGCATGGTGTGCAAATGGTCCCAAAGTTGCCACTTTTAATGTCACCAAAAATGGCTGGATAGAAGAAAATGTGTTTATCAACTGGTTTGTGCCTTTTGTAAAGAAAATTGATCCTGGTAATCATATTCTTATTTTTGATGGTCATGCCAGTCATTGTAGCTACAAGTTAGTTTTGGAAgccaaaaaaaacaatattctaCTGTTGTGCTTGCCCCCACATGCAAGCCATATCTTACAACCTTTGGATGTTGGAGTTTTCAAAGCTGCAAAGCAGGCATGGCGAAACATACTTACTGAATATTATGCAAGCACTggttttgaaaatgttgacaAAATAAACTCTCCTCAACTTATGacaaatttatatcaaatcagttttaaagaagaacattttgtttctgGATTTCGTGGAAGTGGTCTTTTTCCGGTTGATGAAAATATTCCAATGGAAAAAATTATTCCACTAAGTGCTATTCTTAGTCCAGACACTTCTTCAAGTCAAAATTCAATTGCTCCAAGTTCACCATCGTCTACTGCTGACACCAGCATTTCTGACAGCGTCATAAATTTTTTGCAACATAAGTTTGCCAGCAagaaagttgaaaaaaatcgtGGAAGCagaatttcgagaaaattcgGTGAATCACTAACATCTGCTGAAGCAATGAAACGCTTAAAAGAAGTCGcaatgaaaaaattgaaaaaatcgaaaactttaCCAGAAGAATCTGAGGATGAATCTTTTTCATGTGGAATCTGCAAAAAAATCTGGGATGACGAAATTGATGATGAGTGGGCACAGTgtgaaaaatgtgaaaattggATCTGCGGCTCGTGTTTGCCTGAAAATTTTGATCATGATGATGATTTCTTTTGTGAAAATTGTGTGATTTCTATTGATATATAA
- Protein Sequence
- MNEAIAQVKSGDLSLRKAALNFGIPKSTLSEHVRGLSQGQVGHPTIFSVKEEKVLVEVAQVLSNHGLPPTKIDFRRLAKGLLDDSKRKTHFPANFPTKKWLKCFLKRWKNEVSLRVPECLGLNRARALSPETIQRFFQLYTQILQDFQLQNKPACIWNCDESGFGTDPGSTKVLAKRGLHTANLVTGSTLRQSYTVLACGNATGQVVPPLILYKGKHLYSAWCANGPKVATFNVTKNGWIEENVFINWFVPFVKKIDPGNHILIFDGHASHCSYKLVLEAKKNNILLLCLPPHASHILQPLDVGVFKAAKQAWRNILTEYYASTGFENVDKINSPQLMTNLYQISFKEEHFVSGFRGSGLFPVDENIPMEKIIPLSAILSPDTSSSQNSIAPSSPSSTADTSISDSVINFLQHKFASKKVEKNRGSRISRKFGESLTSAEAMKRLKEVAMKKLKKSKTLPEESEDESFSCGICKKIWDDEIDDEWAQCEKCENWICGSCLPENFDHDDDFFCENCVISIDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294890; iTF_01294889;
- 90% Identity
- iTF_01294890; iTF_01294889;
- 80% Identity
- -