Rgig021201.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- clz9
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000077.1:152728-154895[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.6e-13 4.8e-11 43.0 0.0 3 39 14 50 12 54 0.95
Sequence Information
- Coding Sequence
- ATGTCACAGTCTATTCGGAAACGAAAAACATATAACAGTGAAAAAATGAATGAAGCCATTGCTCAGGTTAAATCTGGTGACCTCTCATTAAGAAAAGCTGCATTGAATTTTGGCATTCCAAAATCTACTTTGTCAGAGCATGTTCGTGGCTTAACCCAAGGTCAAGTTGGACATCCAACAATTTTTTCAGTTAAAGAAGAAAAAGTTTTAGTTGAAGTTGCCCAAGTTTTGTCAAATCATAGACTACCGCCAACTAAAATAGATTTCAGACGACTTGCAAAAGGACTTTTGGATGACTCAAAACGAAAAACCCACTTTCCTGCAAATTTTCCTACAAAAAAATGGTTGAAATGTTTCCTAAAGCGTTGGAAAAATGAAGTATCACTGAGAGTCCCTGAATGTCTTGGCTTAAATAGAGCAAGGGCGCTTTCTCCTGAAACAATTCAACGATTTTTTCAGCTTTATACACAAATTCTTCAAGATTTTCAACTACAAAATAAACCTGCCTGCATATGGAATTGTGATGAAAGTGGTTTTGGAACCGATCCTGGGTCTACAAAAGTTTTGGCCAAAAGAGGTTTACACACTGCGAACCTTGTAACTGGTTCAACATTACGTCAAAGTTACACTGTTTTGGCATGCGGTAATGCAACAGGACAAGTTGTTCCTCCATTGATTTTGTACAAAGGAAAGCATTTGTACTCAGCATGGTGTGCAAATGGTCCCAAAGATGCCACTTTTAATGTCACCAAAAATGGCTGGATAGAAGAAAATGTGTTTATCAACTGGTTTGTGTCATCTTTTGTGCCTTTTGTAAAGAAAATTGATCCTGGTCATCATATTCTTATTTTTGATGGTCATGCCAGTCATTGTAGCTACAAGTTAGTTTTGGAAgccaaaaaaaacaatattctaCTGTTGTGCTTGCCCCCACATGCAAGCCATATCTTACAACCTTTGGATGTTGGAGTTTTCAAAGCTGCAAAGCAGGCATGGCGAAACATACTTACTGAATATTATGCAAGCACTggttttgaaaatgttgacaaaataaactttcctCAACTTATGacaaatttatatcaaatcagttttaaagaagaacattttgtttctgGATTTCGTGGAAGTGGTCTTTTTCCGGTTGATGAAAATATTCCAATGGAAAAAATTATTCCACTAAGTGCTATTCTTAGTCCAGACACTTCTTCAAGTCAAAATTCAATTGCTCCAAGTTCACCATCGTCTACTGCTGACACCAGCATTTCTGACAGCGTCATAAATTTTTTGCAACATAAGTTTGCCAGCAagaaagttgaaaaaaatcgtGGAAGCagaatttcgagaaaattcgGTGAATCACTAACATCTGCTGAAGCAATGAAACGCTTAAAAGAAGtcgaaatgaaaaaattgaaaaaatcgaaaactttaTCAGAAGAATCTGAAACGAGTGAAGAATCTGAGGATGAATCTTTTTCATGTGGAATCTGCAAAAAAATCTGGGATGACGAAATTGATGATGAGTGGGCACAGTgtgaaaaatgtgaaaattggATCTGCGGCTCGTGTTTGCCTGAAAATTTTGATCATGATGATGATTTCTTTTGTGAACAAGCAGCTGCCGATAAGACTGCAGCCAAAGAATTTACTGGGCAACTGACCAAAGTTCTCGATGAAGAAAATTTGTACAACGCCGACGAGACTGGATTGTATTTTAAGTCATTGCCGAAACGAACATTGGCTCCAGGAACTGAGAAGGAGGCCTGCGGATTGAAAGAGTCAAAAGAATTGCTCTAA
- Protein Sequence
- MSQSIRKRKTYNSEKMNEAIAQVKSGDLSLRKAALNFGIPKSTLSEHVRGLTQGQVGHPTIFSVKEEKVLVEVAQVLSNHRLPPTKIDFRRLAKGLLDDSKRKTHFPANFPTKKWLKCFLKRWKNEVSLRVPECLGLNRARALSPETIQRFFQLYTQILQDFQLQNKPACIWNCDESGFGTDPGSTKVLAKRGLHTANLVTGSTLRQSYTVLACGNATGQVVPPLILYKGKHLYSAWCANGPKDATFNVTKNGWIEENVFINWFVSSFVPFVKKIDPGHHILIFDGHASHCSYKLVLEAKKNNILLLCLPPHASHILQPLDVGVFKAAKQAWRNILTEYYASTGFENVDKINFPQLMTNLYQISFKEEHFVSGFRGSGLFPVDENIPMEKIIPLSAILSPDTSSSQNSIAPSSPSSTADTSISDSVINFLQHKFASKKVEKNRGSRISRKFGESLTSAEAMKRLKEVEMKKLKKSKTLSEESETSEESEDESFSCGICKKIWDDEIDDEWAQCEKCENWICGSCLPENFDHDDDFFCEQAAADKTAAKEFTGQLTKVLDEENLYNADETGLYFKSLPKRTLAPGTEKEACGLKESKELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294896;
- 90% Identity
- iTF_01294896;
- 80% Identity
- -