Rgig005246.1
Basic Information
- Insect
- Rhagophthalmus giganteus
- Gene Symbol
- TSC22D1
- Assembly
- GCA_036326145.1
- Location
- JARFJA010000001.1:64748136-64752933[-]
Transcription Factor Domain
- TF Family
- TSC22
- Domain
- TSC22 domain
- PFAM
- PF01166
- TF Group
- Basic Domians group
- Description
- These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Drosophila protein bunched [1] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2 3.2e+04 -4.6 1.1 41 55 408 422 400 424 0.53 2 2 2.2e-27 3.5e-23 82.3 1.8 1 47 523 569 523 573 0.97
Sequence Information
- Coding Sequence
- ATGATTCCGGGAAATGTTGACCCTCGCAGGCCCGACAAAGTACAGCGATATAAACCAGCTACTTCAAGTAACAGCAATACGTCTGGAGAAGACTTAACACCAGATTACATGAATATTTTAGGTCCTGATTCGACCACGGGAATTGTGCAAGGAGACAACAAGCttaacgaaaatataaaaggtAGTGAAGGAAAACCTCCTCTGCCAAATCAGCAACAAACGGTACATGTGCAGGACGATGCTTCCAAGTCCAAAACTGAAGCACTCCCTGCCAATACTACAAATGCAAGTAATGTGATACCCACAAGTCCTCAATATGGTGTAGCTATAATTCCTACGGCGAGTACTAACGACATACCGACAGAAGTGGCTACATTATCGACCGACACCATTACAGAATCTACTGCAAAAACGACCGAAAGCGAAATCAAAGATATGCATTCGACTCCGAGTAAAAATGATCgttttaaagttgtaaaaattgCCAGTTCTGAACCATTTAGGAGAGGCAGGTGGAAATGTATGGATTATGTTGATCAAACGCCGCCCGTTACATCACAACAAACCAAAACAACTCAAGGTACCACCAGTGTTCAAATGGCAAGTAACGTCTATTTGCAAACTCAAAGTTTACCGCCTCAACAGatacaacaattattattacaaggGGCCTTCACGACGGCTCCACAACCGCACTTTTATCAAAGCAATTTGCAGTCTCAAATTGTACCGCaaacacaatatttttatccCGCCGTACAGAATCAGGGCAACGTTCCTCAAATGATGAATCCAAGTGTAGTACCGGCAAATTCTGTGCAAACGCAATTCATTAATACGGCACAACAACAGTATTTTCAAACTCCTATGATACcgcaaaattatcaaaatgtaCAATTTGTTCAACCTTCGTATCAGAATCAAAACAGTGCGTTTGTTCCCACTACTCAAAACATgcaaaattttcaacaagCCCAAACGTACGCAGGACAACCGACAGTTTCTCAACAAAGTGTACAGGGTCAGGCCCAAACTATTCCTGCTACTCAATCACAGCCCTTAGTGAACGGCTACGCATACTCGCCTCAAACGATATCCGATCAACAGATTACCGCCAATAATCTTCCGACACAGGTTgccaaaaatgttattttaaattcgaaccCCGTTAATCAAGTGGTACAGAATCAATCTGGAGTTTCGTTACAAAATCAACAACAGGAATCTCAACAGAATTCTCGAACAGTTCAACAGGTTTCTGAACAAAGTCAATCTACATTTCAACAGCCTTCTCAAGTTTCTCAGAATATTAATccaattttacaaaacataaatcCACTTCAAAACGTTATGGTTATACAGTCGTATGATCCAACTCAAGCCACAGACGTGTACACTAATCCTCAATTTGTAGCAAGTATGCACAGTTTACCGACAGCAGATTTGAACGATCCGCAAGTAGTCGAAGGGGCAGAGGCCAATTTAGAAGTTGTCGGCGGTAATCCGGACGATCCGGCGAAAACTAATCCAGTAGTTAATGCAATTGACAATAAAATCGAACAAGCCATGGATTTGGTTAAAAGTCATTTAATGTACACCGTGAGGGAGGAGGTCGAAgttttgaaagaaaaaattgCCGAACTGATGGAAAGAATTCAACAACTCGagtctgaaaataattttttaaggtcACAAATTCCAAAGAACAATCCAAATTCAAATGGCACATCAGATCCTTCACCGCAacaatga
- Protein Sequence
- MIPGNVDPRRPDKVQRYKPATSSNSNTSGEDLTPDYMNILGPDSTTGIVQGDNKLNENIKGSEGKPPLPNQQQTVHVQDDASKSKTEALPANTTNASNVIPTSPQYGVAIIPTASTNDIPTEVATLSTDTITESTAKTTESEIKDMHSTPSKNDRFKVVKIASSEPFRRGRWKCMDYVDQTPPVTSQQTKTTQGTTSVQMASNVYLQTQSLPPQQIQQLLLQGAFTTAPQPHFYQSNLQSQIVPQTQYFYPAVQNQGNVPQMMNPSVVPANSVQTQFINTAQQQYFQTPMIPQNYQNVQFVQPSYQNQNSAFVPTTQNMQNFQQAQTYAGQPTVSQQSVQGQAQTIPATQSQPLVNGYAYSPQTISDQQITANNLPTQVAKNVILNSNPVNQVVQNQSGVSLQNQQQESQQNSRTVQQVSEQSQSTFQQPSQVSQNINPILQNINPLQNVMVIQSYDPTQATDVYTNPQFVASMHSLPTADLNDPQVVEGAEANLEVVGGNPDDPAKTNPVVNAIDNKIEQAMDLVKSHLMYTVREEVEVLKEKIAELMERIQQLESENNFLRSQIPKNNPNSNGTSDPSPQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00977085;
- 90% Identity
- -
- 80% Identity
- -