Rlut013487.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:12655525-12656777[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.8 4.8e+03 -1.2 0.1 21 43 102 124 97 132 0.79 2 8 0.00066 1.1 10.4 0.4 21 53 158 190 152 191 0.90 3 8 0.0037 6.3 8.0 0.1 21 52 186 217 184 219 0.90 4 8 1 1.7e+03 0.2 0.0 22 49 215 241 212 246 0.72 5 8 7.5e-05 0.13 13.4 0.0 21 53 251 283 247 284 0.93 6 8 0.77 1.3e+03 0.5 0.0 23 46 281 304 280 310 0.86 7 8 0.064 1.1e+02 4.0 0.1 27 52 313 338 308 342 0.90 8 8 0.28 4.8e+02 2.0 0.0 24 47 366 389 361 394 0.83
Sequence Information
- Coding Sequence
- ATGGAACAAGTTTATGAAAGTATTGAGGTGGAAGTTATTGTTAAAGAGGAACCATCGGATaatgaagaatattttaataggAATTGCGGAGACGttgatTCCACCTTTTCAGAATTGGAAGCAAGTAGGAAAATACCAAATGGGGTGGAAAGTAAATTAGAAGACAATTACATTAAAGAAGAAATTCACGAAATGACTAATGAAAATTACATTGCAAAAAGAATGGATGGTCATCATCTGCCGGTGTTTCAACAATTACCATTGAGTGTTGTCTCAAAAGTAGAAGAATTTTCGGTATGTCAAActtcaaatgaatttttttgtgATGTGTGCCATAAAACATTTACTACGAAATATAGTTTAAAACGCCATCGATACAGCCATACTGCTGAAAAATTGTATGTGTGTAATGTGTGCGATAAAAGATTTTATGCGAAGAATTGCTTGTCGAATCACATGAGACTTCATACAGGAGAAAAACCGTACACCTGCGAAGTGTGTAGGGTTAGTTTTCACCAGAGGCAATCTTTACAAAGTCACATGAGACTCCACACCGGAGAGAAACCTTACGTTTGCAACCACTGCGGTGCAAAGTTTCGCCAGCAAGGTAACTACCAATCTCACACAAAACTTCATTCCGATGAAAAGCCGTTTGTGTGCGGATACTGTGATATGAAATTTGTATTGAAGGATTATTTAAAACGACACATTAAGAGACATctttttaaaaacagtttaaaaaATGACACCGGTGAGCAACCGCATCCTTGTTATGTATGCGGGGTGACTTTCACCCAGAAGTGGAACTTAAAAAACCacataaaaattcatatttacgGGAAGCCTTttgtgtgtgaaatttgtgatacAAAGTTTAATCGGAAGGATAGTTTGCAAGCCCACCTTAATATTCACACCGGTGGAAAACAATTTAACTGTGAGCAATGTAACGCAAAGTTTTCTTATAAAAACAGTTTACAAAGGCACTTGAAAATTCACTCCGGTGCAAAACCATTTACGTGTGTTCTATGTGGAGCTAAATTCCCTTTCAAATATTACTTACAAAGCCATATGAAAATTCATTCTAATGAAAAATTGTTTTCGTGTAATGTTTGCAGTGTGAAATTTAGTCATAAAACTAACCTGACGAAGCATTTGAAAGTTCATGCCGTTGAAAAAGCAATGGACGTTTTGTAA
- Protein Sequence
- MEQVYESIEVEVIVKEEPSDNEEYFNRNCGDVDSTFSELEASRKIPNGVESKLEDNYIKEEIHEMTNENYIAKRMDGHHLPVFQQLPLSVVSKVEEFSVCQTSNEFFCDVCHKTFTTKYSLKRHRYSHTAEKLYVCNVCDKRFYAKNCLSNHMRLHTGEKPYTCEVCRVSFHQRQSLQSHMRLHTGEKPYVCNHCGAKFRQQGNYQSHTKLHSDEKPFVCGYCDMKFVLKDYLKRHIKRHLFKNSLKNDTGEQPHPCYVCGVTFTQKWNLKNHIKIHIYGKPFVCEICDTKFNRKDSLQAHLNIHTGGKQFNCEQCNAKFSYKNSLQRHLKIHSGAKPFTCVLCGAKFPFKYYLQSHMKIHSNEKLFSCNVCSVKFSHKTNLTKHLKVHAVEKAMDVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294114;
- 90% Identity
- iTF_01294114;
- 80% Identity
- iTF_01294114;