Rlut015536.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- zfy1
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:38287598-38289076[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 3.3 5.8e+03 -1.5 0.0 23 41 70 88 67 103 0.74 2 9 4.1 7.1e+03 -1.8 0.0 21 43 105 127 96 132 0.70 3 9 0.026 44 5.3 0.0 20 45 132 157 120 160 0.83 4 9 0.0072 12 7.0 0.0 21 49 161 189 158 195 0.86 5 9 0.32 5.5e+02 1.8 0.1 22 44 219 241 212 244 0.81 6 9 0.018 32 5.7 0.0 21 51 246 275 241 278 0.87 7 9 0.0012 2 9.6 0.1 21 44 302 325 292 332 0.80 8 9 2.9 5e+03 -1.3 0.1 27 47 336 356 327 363 0.63 9 9 0.33 5.7e+02 1.7 0.1 22 43 359 380 340 384 0.73
Sequence Information
- Coding Sequence
- ATGGCTCAAGTGATTTTGGAAGAGCagcaatatttaaaagaaaCTAGCGATGTTTTGCCAGTGCAGTGTAATTTGATGAAggatttagaaattaaaaaagaaaaatcggAAGATCTACAATGCAACTTCGATCCAGAAGCAATTGTTTTGAAATTAGAACCCAAAGAAGAATGTGAGTTACAGCAATTTGATCTTTTTAAGGTAGAAGAATCTTTTACTTCCGAAATTTGCGACTATGCAAATTTCCAAGGAAGAAATTTGGAAGATGAAGgtaaaatcacCAAATTTGAACGGCATATGAGAACccataccggcgaaaaaccattccATTGCGAATTTTGCGACCATAAATCTATAGACGAATCCAGTTTGCGACAGCACACGAAAACTCATTCGAGCGAAAAACCGTTTGGGTGTGAAATGTGTGATTATAAATCATTACGAAAACTTAATTTAGAACGGCATATGaaaactcataccggtgaaaaGCCTTTCAGAtgtgacatttgtgactataaagcTTTGGACACAACCAATTTGAAACGGCATGTTATGCGAACTCATGTAGGGGAAAAACCATTCGGGTGCGAAAAGTGTGACTATAAATGCTCTAGCAGAGAATCGTTGAAATACCATATGAAACATCATGCCAGGGATAAACCGTATAAGTGTGACGTCTGTGAATATAAATCACTACGCAAAACTAATCTGGATCGGCATGTTCGAACTCACACGGGTGAAAACCCGTACACGTGCATAACTTGTGATCATAAATTTGTAgacaaaactaattttgaacGGCATTTAAAAACCCATCTGGCCAAAAAATCATTAACATGTGGGATTTGCGATTATGAGGCGACGGGCAAAATCACATTTGAACGGCATATGAGAATCCATTCCGGCGAGAGACCATTCACTTGTGGAATTTGTGGCTACAAATCAATAGATAAAGCCAGTTTACGACGGCATCTGGTAACTCATGCAAAGGAAAAACAGTTTAGGTGTAAAAAGTGCGAATATAAAACAGCGCGTAAACCGAATTTAGAACGGCATATGAGAACCCATACCGGGGTCAAACCATTCCATTGcgatatttgtgactataaatcttTTGACGTAAGCAATTTGAAACGGCATAAGAAAACTCATGCaccctaa
- Protein Sequence
- MAQVILEEQQYLKETSDVLPVQCNLMKDLEIKKEKSEDLQCNFDPEAIVLKLEPKEECELQQFDLFKVEESFTSEICDYANFQGRNLEDEGKITKFERHMRTHTGEKPFHCEFCDHKSIDESSLRQHTKTHSSEKPFGCEMCDYKSLRKLNLERHMKTHTGEKPFRCDICDYKALDTTNLKRHVMRTHVGEKPFGCEKCDYKCSSRESLKYHMKHHARDKPYKCDVCEYKSLRKTNLDRHVRTHTGENPYTCITCDHKFVDKTNFERHLKTHLAKKSLTCGICDYEATGKITFERHMRIHSGERPFTCGICGYKSIDKASLRRHLVTHAKEKQFRCKKCEYKTARKPNLERHMRTHTGVKPFHCDICDYKSFDVSNLKRHKKTHAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294414;
- 90% Identity
- iTF_01294299;
- 80% Identity
- iTF_01294299;