Rlut013940.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:17429584-17430831[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.58 1e+03 0.9 0.1 13 49 99 136 95 141 0.72 2 11 2.2 3.9e+03 -0.9 0.0 21 52 136 167 132 169 0.77 3 11 1 1.7e+03 0.2 0.0 21 44 164 187 159 192 0.79 4 11 0.045 78 4.5 0.0 21 48 192 219 185 224 0.85 5 11 0.29 4.9e+02 1.9 0.1 21 46 220 245 217 253 0.69 6 11 1.4 2.5e+03 -0.3 0.1 21 43 248 270 244 275 0.67 7 11 0.011 19 6.5 0.1 21 46 276 301 272 306 0.90 8 11 0.0034 5.8 8.1 0.1 22 46 305 329 302 332 0.88 9 11 1.9 3.3e+03 -0.7 0.0 27 51 337 361 334 362 0.84 10 11 0.00036 0.62 11.2 0.0 21 50 359 388 355 390 0.87 11 11 0.029 50 5.1 0.0 22 46 388 412 385 414 0.90
Sequence Information
- Coding Sequence
- atggAATGCAAATTGGAACCAAGGCATTTCATTAACATTAAAGAAGAACCGTCGGTGTTCCTAGAACAAGAAACGAAAATTATTACCACCATATCAACCAAATGTAATATGCAAGGGTTAGATTCTGTTGATGTTAAGGAACCATCCCATTTTATGGATGAAGTAAAAATGGAGGTAGAAAATGTTGAATATAAAGAAGAAAACTTACACCACACCGTTTGCCTTAAAGAAGGCAATGCTGCAAAATTAAAACAGCATTCCGGAAACAATTCATTGTTGTTTAAAATTGGCGAATCCAAATCAAAAGAAAAATCGCGTTCAGAACTTCGCTCATTTATGTGTGAAGTTTGTGGCCTGAAGCTTGGGAGTAAATCAAGTTTGAAAAGCCACTTGAGAATCCATACGGGCGAAAAAccattttcttgtaaattttgTGGTAATAAATTCTCGGAGAAAGGAAAGTTGAATCTACACCTTAGAATTCATACCGGCGAAAAGCCATTTGTGTGTAAAGTTtgccaatttaaattttcgcgTAAGGGAAGTTTGACGAAGCATTTGAGAACTCATACGGGAGAAAAACCATACGGGTGTCATATTTGCGGCCATAAATTTGCGCTAAACGTAAATTTGAAACAGCACTTAATAATTCATACGGGTGAGAAACCATTCGCGTGCGAAatgtgtgactataaaagtTCGCGAAGAGAAACGTTGAGTAGACACTTAAAAAACCATACGGGAGAAAAACCATTTGCATGTAAATTGTGTCACTACAAGTGTTTAACTGAGAAAAGACTTTTAGTGCATTTGCGGATTcacaccggtgaaaaaccattcgCATGTGAGGTCTGCGCATGCAAATTTTCGGAAATAGGAACGTTGCGCAGACACTTACGAATACATGCTGGGGAAAAATCATTCGAATGCGAAATTTGCTTCTCCAAGTTCAGACACCAATCTTCGTTGAAGAAGCACCTAAGGCTTCACATGGGCGAAACATTTGAGTGTACAATTTGTGATAAAAAGTTTTCGCAAAAATCGTGTTTGAACATTCATTTGAAAATACACAGAGGAGAAAAGCCATTTAAATGCGGAGTTTGTAGCTCCAGTTTCTCACAAAAGGGAAATTTGCGTGATCACTTAAGAATTCACACGGGAGACAAACCATTTGCCTGCGAGATATGTAGTACAAAATTTTcacacaaatcaaatttgaatcagcatttaaaaattcacgaAAAGTAA
- Protein Sequence
- MECKLEPRHFINIKEEPSVFLEQETKIITTISTKCNMQGLDSVDVKEPSHFMDEVKMEVENVEYKEENLHHTVCLKEGNAAKLKQHSGNNSLLFKIGESKSKEKSRSELRSFMCEVCGLKLGSKSSLKSHLRIHTGEKPFSCKFCGNKFSEKGKLNLHLRIHTGEKPFVCKVCQFKFSRKGSLTKHLRTHTGEKPYGCHICGHKFALNVNLKQHLIIHTGEKPFACEMCDYKSSRRETLSRHLKNHTGEKPFACKLCHYKCLTEKRLLVHLRIHTGEKPFACEVCACKFSEIGTLRRHLRIHAGEKSFECEICFSKFRHQSSLKKHLRLHMGETFECTICDKKFSQKSCLNIHLKIHRGEKPFKCGVCSSSFSQKGNLRDHLRIHTGDKPFACEICSTKFSHKSNLNQHLKIHEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294136; iTF_01292261;
- 90% Identity
- iTF_01294136;
- 80% Identity
- iTF_01294136;