Rlut017055.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:49169480-49172002[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0041 7 7.8 0.6 26 54 37 65 33 65 0.83 2 11 0.043 75 4.5 0.4 21 53 60 92 58 93 0.82 3 11 0.021 36 5.6 0.4 19 45 86 112 72 118 0.75 4 11 0.0014 2.4 9.3 0.1 20 53 141 174 134 175 0.87 5 11 0.035 60 4.9 0.8 24 52 213 241 194 243 0.63 6 11 0.03 51 5.1 0.7 21 53 238 270 234 271 0.76 7 11 0.0072 12 7.0 0.1 20 52 265 297 258 299 0.82 8 11 0.00022 0.37 11.9 0.4 20 45 321 346 314 352 0.87 9 11 0.26 4.4e+02 2.1 0.1 21 45 378 402 370 406 0.85 10 11 0.0015 2.6 9.2 0.3 16 45 430 458 419 464 0.86 11 11 2.6 4.5e+03 -1.1 0.1 36 52 473 489 471 491 0.88
Sequence Information
- Coding Sequence
- ATGGAACAAATGGAATTGAAGTTGAAAGAATTGCGTCATTCTATTAAGATCAATGAACCTTCAATTTTAGAAACTCAAACACAAGAACCAGACTGGAAACGATTATTCGCATGTGAAATTTGTAGCTACAAATCTGTAAGAAGGActaatttaaaaaggcatttgAGACTTCACACGGGCGAGAAACCGCATGTGTGTcaaatttgcgactacaaatgtgcaaaACGGGGAACTTTGGAAAGGCATTTGAGAACTCACACCAGCGAAAAACCGCATGTGTGTCTAATTTGCGGCTACAAATGTGCAGAACAGGGAGATTTAGATAGGCATTTGAGAACGCACGCCATTGAAAACCTGCATGTGAGTCAAATTTGTGACGACGCACAACAGGGAGTTTTAGAAAGGCAGTTGGGAATTCACACCAGCGAGAATCCGTTTGGGTGTCAAATTTGTGGCTACAGCTGTGCagaaattggaaatttaaaCAGACATTTGAGAATTCACATCGGTGAAAAACCGCATGTGAGTCAAATTTGTGACGACAAATGTGCAGAGGAGGGAGATTTAGAAAGCCATTTGAGAACTCATCCCGGCGAGAAACCATATGAATGCCAAACACAAGAACCAGACCGGAAACAATTCGCATGTGAAATTTGTAGCTACAAATCTGTAAGCAGGtctaatttaaaaaggcatttgAGAACTCACACGGGCGAGAAACCGTATGTGTGTcaaatttgcgactacaaatgtgcaaaACAGGTAACTTTAGAAAGGCATTTGAGAACTCACACCAGCGATAAACCGCATGTGTGTCTAATTTGTGGCTACAGCTTTGCagaaattggaaatttaaaCAGACATTTGAGAACTCACATCGGTGAAAAACCGCATGTGAGTCAAATTTGTGACGACAAATGTGCAGAGGAGGGAGATTTAGAAAGCCATTTGAGAACTTGCTCCAGCGAGCAACCGCATGTGTGTCtaatttgcgactacaaatgtgcagACCAGGAAAATTTAAACaggcatttaagaactcacaccggTGAAAAACTGCATGTGAGTCCAATTTGGGACCATGACTATGCGAAACAGGGAAATTTAGAAAGTCAGTTGAAAACTCACACCAGCGAAAATCTGTATGTGTGTCAAATTTGTGGCTACATATGTACTGAAAAGGGACATTTAAACAGACATTTGAGAACTCACATGGGTGAAAATCTGAATGTGAGTCAAATTTGTGACGACGTATGTGCAGAACATGAAGATTTAGAAAGCCATTTGAGAACTCGCTCCAGCGAGCAATCGCATGTGTGTCtaatttgcgactacaaatgtgcagATGAGGAAAATTTAAACAGACATTTGAGAACTCACACCGGTGAAAAACTGCATGTGAGTCATGAATATACACAACAGAGAGATTTAGAAAGGCCGTTGAGAACTCGCACCATCGAGAAGCCGCATATGTGCATTACTTTCACAGTTAAGGATACGCTCCACGGTTCAAGTGTTGTTTCGCCAGTACAAGGTGGCGCATAA
- Protein Sequence
- MEQMELKLKELRHSIKINEPSILETQTQEPDWKRLFACEICSYKSVRRTNLKRHLRLHTGEKPHVCQICDYKCAKRGTLERHLRTHTSEKPHVCLICGYKCAEQGDLDRHLRTHAIENLHVSQICDDAQQGVLERQLGIHTSENPFGCQICGYSCAEIGNLNRHLRIHIGEKPHVSQICDDKCAEEGDLESHLRTHPGEKPYECQTQEPDRKQFACEICSYKSVSRSNLKRHLRTHTGEKPYVCQICDYKCAKQVTLERHLRTHTSDKPHVCLICGYSFAEIGNLNRHLRTHIGEKPHVSQICDDKCAEEGDLESHLRTCSSEQPHVCLICDYKCADQENLNRHLRTHTGEKLHVSPIWDHDYAKQGNLESQLKTHTSENLYVCQICGYICTEKGHLNRHLRTHMGENLNVSQICDDVCAEHEDLESHLRTRSSEQSHVCLICDYKCADEENLNRHLRTHTGEKLHVSHEYTQQRDLERPLRTRTIEKPHMCITFTVKDTLHGSSVVSPVQGGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294133;
- 90% Identity
- iTF_01294133;
- 80% Identity
- iTF_01294133;