Rlut027054.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294040.1:42808945-42810297[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6 1e+04 -2.3 0.0 18 36 217 235 213 245 0.77 2 4 0.14 2.5e+02 2.9 0.0 19 47 244 272 240 277 0.90 3 4 0.00012 0.2 12.8 0.1 11 44 291 324 283 334 0.84 4 4 2.9e-06 0.005 17.9 0.1 21 53 357 389 343 390 0.85
Sequence Information
- Coding Sequence
- atgcagTCAGAGTGCCGTACGTGCCTAAAAATTTCGGATAATTTGTTAAACATCTTTTGCGACGATTTACCGAACAAAATTACTACAATTTCTTCGGTGGAAATTTCACCAGATGATGGTTTTTCTGATCAAATATGTGAAGAGTGCATAGAAAACGTACATCTTCTCCACAGTTTCCGCACACAAATCATAAAGAGTCAGGAAGCCCTGGAAGagaacacaaattattttgGATCCGAGTGCCGGATGTGTTTGAAAGTTGAGAAGGGCAACAAATATTCGAATGTACTGTTTGACGGTTTGCCGCACAAAATAGAAACGCTGTCTTGTGTTGATGTTATGCCAGGCGATCGCTTTTCCAAGAAAATTTGTGGCGAATGCGTGAAGAATGTGCACACTTTGTACCGTTTTCGTAACACCATCATAAAAAGTTACAGGATTTCAGATGAACGGAGAATTAAGAAAGAAGAATTTGAAATCGAAGATATTAAACTAGAAACGGATGATTTGGTGGAGGATGATTCTAGTACAGCTGTTACAACGGAAAAGAAAGTTCAGAAAAGAATTGTAGTGCGTAGAATTCACTTGTGCAAGTGTACAATTTGCAACTTTTTAACCCCGCACTACAAAGAGTGGCAGAAACACTTCCGAAGTCATCGGGAACCAATGAGCATGTGCGAATTTTGCGGAAAGATgattaaaaatgattatttaactACCCACCTGATGAGTCATTCCGAAACTTGGTTAACGTGCGATTTATGCGGACAGAAACTGAAAAACAAGCTGACCCTTATGTCACATTTACGGTTGCATAAGCAAACGGCGTTCAAATGTTTGTTGTGCGGATCGGTCTTAAAGAGCAGACGAGGTTACAGTAAACACATGAAAAGGCACCGAAGTGAGAAACCCGAAAAGTGCCCTTTGTGTAACTGGGCTTTTTATCAGAAATTTGAGCTAAGTAAGCATATGCGGAGTCACACGGGGGAACGGCCGTACCTTTGCAAGACGTGCGACAAAGGATTTTCTAGCCCAACCGCTTTAAAAACGCATATAAGGCAGCACACGCAGGAGACACCGTTTACATGCCAATTTTGTGATGCAGCTTTCAAGCAGGCTGTGTTAGTTAGGCGCCATCTGAATTCAAAACATCCTGATAAAGTTGGCAAAAATAAACCGAAtaattaa
- Protein Sequence
- MQSECRTCLKISDNLLNIFCDDLPNKITTISSVEISPDDGFSDQICEECIENVHLLHSFRTQIIKSQEALEENTNYFGSECRMCLKVEKGNKYSNVLFDGLPHKIETLSCVDVMPGDRFSKKICGECVKNVHTLYRFRNTIIKSYRISDERRIKKEEFEIEDIKLETDDLVEDDSSTAVTTEKKVQKRIVVRRIHLCKCTICNFLTPHYKEWQKHFRSHREPMSMCEFCGKMIKNDYLTTHLMSHSETWLTCDLCGQKLKNKLTLMSHLRLHKQTAFKCLLCGSVLKSRRGYSKHMKRHRSEKPEKCPLCNWAFYQKFELSKHMRSHTGERPYLCKTCDKGFSSPTALKTHIRQHTQETPFTCQFCDAAFKQAVLVRRHLNSKHPDKVGKNKPNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294434;
- 90% Identity
- iTF_01294434;
- 80% Identity
- iTF_01294434;