Rlut015538.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:38298603-38300177[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.026 45 5.3 1.0 15 45 124 154 112 159 0.80 2 12 0.00078 1.3 10.1 0.0 21 46 158 183 154 189 0.90 3 12 1.4 2.4e+03 -0.3 0.1 21 44 215 238 204 242 0.81 4 12 0.017 30 5.8 0.1 20 46 242 268 232 274 0.78 5 12 0.0051 8.8 7.5 0.0 21 52 271 303 267 305 0.85 6 12 2 3.5e+03 -0.8 0.0 23 45 302 324 299 333 0.66 7 12 0.23 3.9e+02 2.3 0.1 22 45 357 380 353 384 0.81 8 12 0.0049 8.4 7.6 0.1 21 51 384 413 380 416 0.89 9 12 2.1 3.7e+03 -0.9 0.1 22 31 413 422 411 438 0.70 10 12 0.00031 0.54 11.4 0.1 21 47 440 466 430 473 0.82 11 12 0.97 1.7e+03 0.2 0.1 22 52 469 499 465 501 0.81 12 12 0.43 7.5e+02 1.3 0.1 11 44 486 519 479 523 0.69
Sequence Information
- Coding Sequence
- ATGACTCAAGTTTTTTTGGAAGAGCAGCAATATTTAAAGGAAACTAGCGACGTTTTGCCAGTGCAATGTAATTTGATTAGGgattcagaaattaaaaaagaaaaattggaaGATCTACAATTGAATTTTGATCCAGaggcaatttttttgaaatcggaaCAGAGCGAAGAATGTGAGTTACAgcaatttgatatttttaaggTAGAAGAATCGTTTACCTCCGAAATTTGCGACTATGGAAATTCTCAAGGAGAAAATTTTGAAGATGATAAAGGTAAAATTCACAGTAACGAAAGACTATTAGCTTGtaaagtttgtgactataaatcatTGACCAAACGCACTTTGAAACAGCATATAAAAACTCATACTCGCATTCGCaccaaagaaaaaaaaacttttccgtgtaaaatttgtgattataaatcaATTCGCAGAACTAATTTGCAACGCCACATAAGAACCCATTTTAATGAAAAACCGTTTACCTGTGCAATTTGTGACCATAAATTTGTAGACAAAGTCAATTTGGCGCGACATTTGAAAATACATATAGACAAAAAAGTGTTCTCTTGTGGAATTTGCAACTATAAATTAACAGGTAAAATCACCAAATTTGAACGGCATATGAGAACCCATACAGGAGAAAAACCATTCCATTGCGAATTTTGTGACCATAAATCTATAGATGAAACCAGTTTGCGACGGCACACGAGAACTCATTCGAGCGAAAAACCGTTTGGGTGTGAAATGTGTGATTATAAATCATTACGAAAACCTAATTTAGAACGGCATAtcaaaactcatactggtgaaaaGCCTTTTAGATGTGACATTTGCGACTATAAAGCGTTGGACACAACCAATTTGAAACGCCATGTCATGCGAACTCATGTAGGCGCAAAACCATtttcttgtgaaatttgtgattatagcACAACAGGCAAAAGTATTTTAGAACGGCACATgagaactcatacaggcgaaaaaccattCGGGTGCGAAAAGTGTGACTATACATGCTCTAGCAAAGAATCGTTAAAATATCATATGAAAAATCACGCCGGGGATAAACCGCATAAGTGTGACGTTTGTGAATATAAATCACTACGCAAAACTAATCTGGATCGGCATGTTAGAATTCACACAGGTGAAAAACCGTACACGTGCAAAACTTGTGAGCATAAATTTTTAGACAAAACTAATTTGGATCGGCATTTAAAAACCCATCTGGCCAAACAATCATACACGTGTGGGATTTGCGCTTATGAGGCGACGGGAAAAATCACATTTGAACGGCATATGAGAATCCATTCCGGAGAGAGACCATTCACTTGTGGAATTTGTGGCCACAAATCAATAGACAAAACCAATTTACGACGGCATATGCTAATTCATGCAAAAGAAAAACCGTTTAGGTGTAAAGAGTGCGATTATAAAACAGCGCATAAACCGAATTTGGAACGGCATGTGAGAATCCATACCGGGGTCAAACCATACGATTGcgatatttgtgactataaatcttTAGACTTAACCAATTTGAAACGGCATAAGAAAATTCATGCAgcctaa
- Protein Sequence
- MTQVFLEEQQYLKETSDVLPVQCNLIRDSEIKKEKLEDLQLNFDPEAIFLKSEQSEECELQQFDIFKVEESFTSEICDYGNSQGENFEDDKGKIHSNERLLACKVCDYKSLTKRTLKQHIKTHTRIRTKEKKTFPCKICDYKSIRRTNLQRHIRTHFNEKPFTCAICDHKFVDKVNLARHLKIHIDKKVFSCGICNYKLTGKITKFERHMRTHTGEKPFHCEFCDHKSIDETSLRRHTRTHSSEKPFGCEMCDYKSLRKPNLERHIKTHTGEKPFRCDICDYKALDTTNLKRHVMRTHVGAKPFSCEICDYSTTGKSILERHMRTHTGEKPFGCEKCDYTCSSKESLKYHMKNHAGDKPHKCDVCEYKSLRKTNLDRHVRIHTGEKPYTCKTCEHKFLDKTNLDRHLKTHLAKQSYTCGICAYEATGKITFERHMRIHSGERPFTCGICGHKSIDKTNLRRHMLIHAKEKPFRCKECDYKTAHKPNLERHVRIHTGVKPYDCDICDYKSLDLTNLKRHKKIHAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294146;
- 90% Identity
- iTF_01294146;
- 80% Identity
- iTF_01294146;