Rlut013990.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294038.1:17853139-17854431[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.023 39 5.4 0.1 21 46 120 145 112 152 0.85 2 9 0.049 84 4.4 0.0 21 46 148 173 144 179 0.86 3 9 0.0051 8.8 7.5 0.0 23 45 178 200 172 203 0.88 4 9 0.0014 2.4 9.4 0.3 21 46 204 229 200 237 0.87 5 9 0.075 1.3e+02 3.8 0.2 21 44 260 283 252 291 0.85 6 9 0.19 3.2e+02 2.5 0.0 21 45 288 312 284 318 0.89 7 9 0.086 1.5e+02 3.6 0.2 21 45 344 368 335 372 0.83 8 9 0.0048 8.4 7.6 0.0 21 51 372 402 368 403 0.87 9 9 7.4e-06 0.013 16.6 0.6 22 44 401 423 398 429 0.88
Sequence Information
- Coding Sequence
- ATGATTAAAGTGGAACCTTGGGATGAATTTGAACagaatgaacaaattttaaacatcTCGCAAGACGACAGAAACGAATCCAACTGCAGCATTAACATTAAGACCGAAGCAGAAGAAATAACTGAGAATGGATATTATTCAATCACCATTAAAGAAGAAATTGCACCCCTGGAAGATAGATTTCGTGATGATTTCGAAACAGATATAAAGCCCAACATTTTTGCTTGTGAAATTACTACCCCATATAACTTCCAAACAGAAGCCATTCATGCAACCGAAAGAATACTTGGATGTGATTTTTGCAACTGCAGGTTTACGATTAAATCGCAATTGGAAAGACATCTAAGAACCCAcaccggcgaaaaaccgttcACTTGTGAATTTTGTACCTCCAAATTTTCGGAACGCAGAATTTTGCAAGAGCATCTGAGGACCCATACGGGGGAGAAGCCATTTTTGTGCAAAGTGTGTGACCTAAAATTTTCTCAGAAGGGTAATTTACATGCGCATCTAAGAACCCACTCAGGATTGAAACCTTTCGACTGTGATACTTGCGATGCAAAATTTTCGCAAAAGGGAAATTTGCAACGACATTTGAGAACGCATACGGGTGAGAAACCGTATGCCTGCAAACTTTGCCATCAAACTTTCCGAGAAAACAGAAGTTTACAGGGACATTTGCGAAGTcacaccggtgaaaaaccattcgAGTGCGTCCTCTGCGACTTTAAATGTTCGTACAAGCTAAGCCTGCAAACCCATCTTAGAACTCATACAGGTGAGAAGCCGCATGCTTGTTCACTATGTGACTTCAAATGTTCACACAAAGTGAGTCTGCGAAGACACATACTAACGCATACGGGAGAAAAACCTTTCATGTGTGAAGTATGCAAACTGAAATTTTCACAAAAGGGTCACATGCAACGCCATATGAGAACCCACACAGGAGAAAAACTGATCGAGTGCAAATTTTGTAACGCAAAAGTCCTGGATAAAAGAATCATGGAAGAACACATACGAACTCACacaggggaaaaaccgttttctTGTGACTTTTGCGACTTCAAGTGCTCGCACAGGCAAAGTATGCGAAGACATCTGAGAACTCATAcgggcgaaaaaccgttttcgTGCagagtttgtaatttcaaattttcacaaaaagaTACTTTGCGTGAACATTTGAATATTCACACGGGTGATAAGCCGTATACGTGCGGAATTTGTGGGTTTAAGTGCTCACAAAAGAGAAATCTACGAAGACATGTCAGGCATCACATGGTCGAAAAGTAA
- Protein Sequence
- MIKVEPWDEFEQNEQILNISQDDRNESNCSINIKTEAEEITENGYYSITIKEEIAPLEDRFRDDFETDIKPNIFACEITTPYNFQTEAIHATERILGCDFCNCRFTIKSQLERHLRTHTGEKPFTCEFCTSKFSERRILQEHLRTHTGEKPFLCKVCDLKFSQKGNLHAHLRTHSGLKPFDCDTCDAKFSQKGNLQRHLRTHTGEKPYACKLCHQTFRENRSLQGHLRSHTGEKPFECVLCDFKCSYKLSLQTHLRTHTGEKPHACSLCDFKCSHKVSLRRHILTHTGEKPFMCEVCKLKFSQKGHMQRHMRTHTGEKLIECKFCNAKVLDKRIMEEHIRTHTGEKPFSCDFCDFKCSHRQSMRRHLRTHTGEKPFSCRVCNFKFSQKDTLREHLNIHTGDKPYTCGICGFKCSQKRNLRRHVRHHMVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00271686;
- 90% Identity
- iTF_01292454;
- 80% Identity
- iTF_01294200;