Basic Information

Insect: Rhagonycha lutea
Gene Symbol: RREB1
Assembly: GCA_958510855.1
Location: OY294036.1:12387074-12392712[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0091 0.6 11.6 1.4 1 23 91 113 91 113 0.95

2 15 0.0088 0.58 11.7 0.0 1 23 126 148 126 148 0.97

3 15 8.6e-06 0.00057 21.2 3.1 1 23 154 176 154 176 0.98

4 15 0.0042 0.28 12.7 2.0 2 23 279 301 279 301 0.90

5 15 0.66 44 5.8 0.7 1 19 350 368 350 369 0.89

6 15 0.075 5 8.8 0.2 1 23 501 523 501 523 0.97

7 15 0.0073 0.48 11.9 0.7 1 23 532 554 532 554 0.96

8 15 0.0083 0.55 11.8 3.7 1 23 560 583 560 583 0.97

9 15 0.00069 0.046 15.2 1.5 1 23 988 1011 988 1011 0.96

10 15 0.00047 0.032 15.7 0.6 2 23 1237 1258 1236 1258 0.97

11 15 0.69 46 5.7 7.1 1 23 1264 1287 1264 1287 0.97

12 15 0.00039 0.026 15.9 1.0 1 23 1316 1340 1316 1340 0.97

13 15 0.55 37 6.0 2.5 1 23 1405 1428 1405 1428 0.94

14 15 0.033 2.2 9.9 0.4 3 23 1476 1496 1474 1496 0.93

15 15 0.026 1.7 10.2 7.8 1 23 1502 1524 1502 1524 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0091	0.6	11.6	1.4	1	23	91	113	91	113	0.95
2	15	0.0088	0.58	11.7	0.0	1	23	126	148	126	148	0.97
3	15	8.6e-06	0.00057	21.2	3.1	1	23	154	176	154	176	0.98
4	15	0.0042	0.28	12.7	2.0	2	23	279	301	279	301	0.90
5	15	0.66	44	5.8	0.7	1	19	350	368	350	369	0.89
6	15	0.075	5	8.8	0.2	1	23	501	523	501	523	0.97
7	15	0.0073	0.48	11.9	0.7	1	23	532	554	532	554	0.96
8	15	0.0083	0.55	11.8	3.7	1	23	560	583	560	583	0.97
9	15	0.00069	0.046	15.2	1.5	1	23	988	1011	988	1011	0.96
10	15	0.00047	0.032	15.7	0.6	2	23	1237	1258	1236	1258	0.97
11	15	0.69	46	5.7	7.1	1	23	1264	1287	1264	1287	0.97
12	15	0.00039	0.026	15.9	1.0	1	23	1316	1340	1316	1340	0.97
13	15	0.55	37	6.0	2.5	1	23	1405	1428	1405	1428	0.94
14	15	0.033	2.2	9.9	0.4	3	23	1476	1496	1474	1496	0.93
15	15	0.026	1.7	10.2	7.8	1	23	1502	1524	1502	1524	0.98

Sequence Information

Coding Sequence: ATGCAAGGTACAATAGTAATGCCTGATGAACATCTACAGAGCAGTACACCACCACCAAATAAAAGCAACGATCCCCAAAATAATATGGATATATCTCCAAAGTCTACTTTAGCAACCAAAGATTTTAATGTGAACCAAAGTAACCAAAGCGATTCGGGTATTTTATCTGCTACCGGTACCTCCACATACATCGATATGGAAGTTAGCAGCAACCGTTCCGAAAATGAAGAAACCGACAACAGAAGCAGCTGTAGTTCTCCAGACcgcaaatttttatgttcaattTGCGAGACCATCCTTACGTCTCAACATGAATTCACTCTTCACATACGATCTCATAACAACGAATCCGAAGCGCAGGACAACGAAAAGGGTTTTGTCTGTCGCATTTGTTCCAAAATTCTAAGTTCGGCTGCAAGTTTGGACAGGCATGTGCTCATACACAGTGGAGAAAGACCTTTCCCGTGCAAATATTGCGGTGACACGTTTACTACAAATGGAAACATGCATCGCCATATGCGAACTCATACGAATAAAACAAATTACGAATCAGACGGAAGTTCTGACAGTGGCGCAAGCTGCAGTTCCAAAACTGTAGAATACAATAATAACAAGGTGATaccaaaaattgatatcaataCTGGTTGCGATATGACCAAAAAACGAAATTGCACTACCATAGacgaaaacaaaaacaataaaagaattaaaCTACAAGAACCATCGTACGAGTCTAGTCAAACTTATGCTTGTCCTGTATGCAGACGAGATGATTTTACTTCCACCGATATTTTGGAAATACATTTAGAAGACAATCATCCAGATTTTTCTGCGAAATGTAACATTtgcaataaaacttttaaaaatttgaaagtattAAGAGAACACAAGTTTAACATTCATACTAAAAATGGAAGCAAACACCAAAAAAATTCCGTCCTAGGATTTCAAGATTTAACCTTTGTTGATTTCTCGAGTCAAAAATTCCCTTACATAGCGAAATACGAATGCGAAAAAAATTTACACAGACCTGCTAGTGCACCAAAATTCCAATGCAATAAGTGTTCCAGAGCATTTCCTTGCTCCATGTCCCTTGAAATTCACGTTCCCGATTGTACGGCAAGTTTGGATTTATCgacaaaaacaaaattgcacTCAAGTGATGAAAAGGAATCCGAAAAAGATGTGTACAGAAACGACTTCTTTGCACGATTAGATCTTCAAAGTAAATTGCAAAAATCTGATGATGGAAGAGAGGAGCAAGTATTAAAATACAACACCAACATTTTACCCCACCCCGATACCAAAGACTTAGCTGACATACAATCCATTATTTCCATCACCACAAATGGAAGTTTATTGCATCAACTCCAAACAAATCCGAACGACTTAAATTCGATAAAACAAGAAAGCGAACTCGACTCGTCTAGGAACGAGAATGACGAAGAATCGCAAGATATATTTGCAACCGAATTTCGTAAAATGAAAATACGTGGAGAATTTCCTTGTCGACTCTGTCGTGCAGTGTTTCCCAACTTGCGAGCTTTGAAAGGTCACAACAGATCTCATTTAAATGGCAACAATAATGGAATGTATCTCTGCAATATGTGCCCACACTCGTCGTTAGACAAAGCAGCTCTAATAAGACACATGAGAACGCACAATGGTGATCGTCCTTACGAATGTTCACTCTGTAAGTACGCTTTCACAACAAAAGCAAACTGTGAAAGACACCTGAAGAATAGACATGCCAAAAACACACGAGAAGAAGTAAAGAAAGCTATTATTTATCATCCTTCTGAAGATCCGAGTAACGAAGAAATAAGTAAAATGTTGTCGCATGAAGAAACAAATAAAGCGCTTCTTCTCTCGAATACTCACAAAAGCGTCAACAAACCGACcgataaagtaaaaattatgaCACCAAATATTACAAATCTTTTAATAACAAGTCCAACAAAGAATCCTACTTTATCCGAAAATATCAACAGTTTTAATATCGAAGCCAATATTTCTCGGTGTTACCCTGGAAGCGAAATTCCTCATAAAGATAATCTGAATGTACCTCCTCAAATTGTGGCACCTTACTCACCacagtttaatttttatcccaAGCTTGAAAATACTTCAACGCCACAGAAAACTTTAcctaaaattaatgtaaaaaatatagaATCGCTGATAACTCCAGAACAAGAAGCTAATGAAGATTTAAATAATTCGGATTGTGAGTCGATGGAATGTGACGATCAGCCAATGGATTTAGTTTTAGATTTAAGTAAGAAGAAATCTGAACCCATGCATACTcatcaagaaattcaaaaagtgTCGCCGGTAATGGATCATCCTCAAGACTTATCAAAACGAAGTACCGAAATTCCGATTCCAacacaaaacgaaattttaacTCAGAATCTTTTGAAATCTACAGCAAAATTGGATCAGGCTGCCTTGTATGCTTCTCAATTAGCTTTATACAGAAACACATTTCCTCCTTTGCATTCTTTACATACTTGGCCTTTCTCACTGAATCCGTTATTATTTCAATCAATGTCATCGCCACTTATAAATCAGGATCCCCAAGAAATCAAAGAGCGATTGCAACGTTTACAACTATGCGGTGGGGGAATGATTATGGATAATTTTGCGgaacgatttaaaaattatcaccaGTCTATTAATAATGCAAACTTAAACGCattcaataattataaagtaAACGAAGTTCAACAAGCTATGCACGAATCCAATTATTTACATAGAACAGCCAAACCCGACGATTGTACACCTTTATCCCTATCAGTTGATCAAAATCTAGGAGAAAACATGACCTCAATGCACAGTCCTGGACACATACCAAAGGCAGAATCGATTACAGCTTCGAGTTCAGtaaaaatgattattaaaaatggCGTCTTGATGCCCAAACAAAAACAAAGGCGTTATAGAACCGAAAGGCCATTCTCGTGCGAATATTGCTCTGCTAAATTTACACTTCGGTCCAACATGGAGCGCCATATCAAACAGCAGCATCCCCAATTTTGGCAACAACGACATAAAGCAAGCATTGGAGCTGGTAGAAAACCTACAACAATCAgtacaaatcaaaaacaaaatttttgtaacataaaCATTCCTAATTATGACACACCGAGAAAGCAAGAATATGATGAATCAAAAGATAATCAAATAAGTGACAAAATCAAATATGCAATCCTTGCCCAACAATTGAAAGAATCGCATGATTATAAAACAACCAGCAAAAGcgatattaaaattaaagaagagGACGAAGAGGTACCACTAATAATTGATGAACCGAAcgaaaatgctaacaaaattgACGAGGGTGTTGATCGAAGAATAAACGACCACTTTTCTGATAAAAGTAAGCAATACGCTGAAATGCACGCCTCAAACACTTTGAATTTCAATACCATAAAAAATGAAGAAACTCAAGATTTAGTTCCAGTTGCTCGATTACTGGACAACGCATCACAACaaccttttaaaaaatattttcacagAGAATCGGATGGACGTGAAGGTGGTGTTAGTGAAGAAGACGAAGAAGGATTAGTTGCAAGTGGTAGTACGAGTGAAGAAAATAATTCTGGAACGGATGAAAATAgATCCGAATCGGAAAATGCTGTTTTACCCACACCTGTAAAGAAAAAGTCGGCATATTCTTTGGCTCCAAATCGCGTCACTTGTCCTTATTGTAAACGTAAATTTCCTTGGACGTCATCATTGCGAAGACACATATTAACCCATACTGGACAAAAGCCATACAAATGTAGTCATTGTTCGTTGTTATTCACAACCAAATCTAATTGCGATCGTCATCTTCTGCGAAAACATGGAAATGCGGCTAGCGTCATTAACACCAACGATCATTCCGCAGGTTCAACAAATTTCATGATGCGAAATGTTCCCGATCGACCCTACAAGTGTCCTACTTGTCCGAGTAGTACATTTgcaacaaattcaaatttaagaaaacataTTAGTACAAAACATTCGTTGCAAGGTGCTCCGAGTGATGATGCACAAGTTTCTCCGGGATACGAAGCCGGAAGTTCCGAAGACGAAAAAGTATCTCTAGGTGAACGAAAAAGTGAGTGGGATAAGCAATTATTACCTAACAACAAAGTACTTCCATATTCCAACTCGGATCCTCAGAATATACACTTGCAAAATTCCGATTTACCATTTAAATGTCACTTATGTGATAATTCATTTGGAGAACGACACGATGCTCTGGATCATATCAAAGACAAACACAATTCCGAATACGAATTGTTGTTGTCTAAGAATGCATTGGATGTAAACGCCACCACGCCCGACGAAAATCCTCACCACGATGAAAATGAAGAAAGCGAAGTTCGGGGGAAATTTCCGGATTATGCCAACAGAAAAGTGATTTGTGCATTTTGCATGCGCCGATTTTGGTCTGCGGAAGATTTGAGAAGGCACATGAGGACGCATACTGGAGAGAGGCCATTCAGTTGTGACGTTTGCCATCGTCGTTTCACTTTAAAACACAGCATGCTGCGACATCGAAAGAAGCACAACTTGCAGTCAGAAAATGATCAAATCAATAGTGACGAAGATAATAATTGTGTAAATTTAAGTTCATCatacaaaacaaataataacaatatggaAAGAAAATCGTCAGAGAAAACGGACGAATCTGACGGTACCGAAAGTGACTTAATCAGCAACTTGTTGGGAATTCGCGATCGTTCGATCATAGAACAAGTTTTAACTTCTTCTGCCGATGATGCAGCCAAATTATTAGGTGTTAAAAGTGGAGAATCGGAATAA
Protein Sequence: MQGTIVMPDEHLQSSTPPPNKSNDPQNNMDISPKSTLATKDFNVNQSNQSDSGILSATGTSTYIDMEVSSNRSENEETDNRSSCSSPDRKFLCSICETILTSQHEFTLHIRSHNNESEAQDNEKGFVCRICSKILSSAASLDRHVLIHSGERPFPCKYCGDTFTTNGNMHRHMRTHTNKTNYESDGSSDSGASCSSKTVEYNNNKVIPKIDINTGCDMTKKRNCTTIDENKNNKRIKLQEPSYESSQTYACPVCRRDDFTSTDILEIHLEDNHPDFSAKCNICNKTFKNLKVLREHKFNIHTKNGSKHQKNSVLGFQDLTFVDFSSQKFPYIAKYECEKNLHRPASAPKFQCNKCSRAFPCSMSLEIHVPDCTASLDLSTKTKLHSSDEKESEKDVYRNDFFARLDLQSKLQKSDDGREEQVLKYNTNILPHPDTKDLADIQSIISITTNGSLLHQLQTNPNDLNSIKQESELDSSRNENDEESQDIFATEFRKMKIRGEFPCRLCRAVFPNLRALKGHNRSHLNGNNNGMYLCNMCPHSSLDKAALIRHMRTHNGDRPYECSLCKYAFTTKANCERHLKNRHAKNTREEVKKAIIYHPSEDPSNEEISKMLSHEETNKALLLSNTHKSVNKPTDKVKIMTPNITNLLITSPTKNPTLSENINSFNIEANISRCYPGSEIPHKDNLNVPPQIVAPYSPQFNFYPKLENTSTPQKTLPKINVKNIESLITPEQEANEDLNNSDCESMECDDQPMDLVLDLSKKKSEPMHTHQEIQKVSPVMDHPQDLSKRSTEIPIPTQNEILTQNLLKSTAKLDQAALYASQLALYRNTFPPLHSLHTWPFSLNPLLFQSMSSPLINQDPQEIKERLQRLQLCGGGMIMDNFAERFKNYHQSINNANLNAFNNYKVNEVQQAMHESNYLHRTAKPDDCTPLSLSVDQNLGENMTSMHSPGHIPKAESITASSSVKMIIKNGVLMPKQKQRRYRTERPFSCEYCSAKFTLRSNMERHIKQQHPQFWQQRHKASIGAGRKPTTISTNQKQNFCNINIPNYDTPRKQEYDESKDNQISDKIKYAILAQQLKESHDYKTTSKSDIKIKEEDEEVPLIIDEPNENANKIDEGVDRRINDHFSDKSKQYAEMHASNTLNFNTIKNEETQDLVPVARLLDNASQQPFKKYFHRESDGREGGVSEEDEEGLVASGSTSEENNSGTDENRSESENAVLPTPVKKKSAYSLAPNRVTCPYCKRKFPWTSSLRRHILTHTGQKPYKCSHCSLLFTTKSNCDRHLLRKHGNAASVINTNDHSAGSTNFMMRNVPDRPYKCPTCPSSTFATNSNLRKHISTKHSLQGAPSDDAQVSPGYEAGSSEDEKVSLGERKSEWDKQLLPNNKVLPYSNSDPQNIHLQNSDLPFKCHLCDNSFGERHDALDHIKDKHNSEYELLLSKNALDVNATTPDENPHHDENEESEVRGKFPDYANRKVICAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCHRRFTLKHSMLRHRKKHNLQSENDQINSDEDNNCVNLSSSYKTNNNNMERKSSEKTDESDGTESDLISNLLGIRDRSIIEQVLTSSADDAAKLLGVKSGESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00271811;
90% Identity: iTF_00273069;
80% Identity: -