Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:64204153-64205979[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00013 0.0087 17.4 2.3 1 23 106 129 106 129 0.96

2 17 0.017 1.2 10.7 3.4 1 23 135 157 135 157 0.98

3 17 0.00042 0.028 15.8 2.1 1 23 163 186 163 186 0.94

4 17 0.0025 0.17 13.4 4.2 1 23 192 215 192 215 0.97

5 17 0.00018 0.012 17.0 3.2 1 23 221 243 221 243 0.98

6 17 0.0015 0.099 14.1 1.4 1 23 249 272 249 272 0.96

7 17 0.0011 0.074 14.5 0.5 1 23 278 301 278 301 0.96

8 17 0.0033 0.22 13.0 3.1 3 23 309 330 307 330 0.97

9 17 0.00012 0.0078 17.6 0.3 3 23 338 358 336 358 0.98

10 17 0.00081 0.054 14.9 0.8 3 23 366 387 364 387 0.96

11 17 0.011 0.73 11.4 1.6 1 23 393 416 393 416 0.95

12 17 0.0027 0.18 13.3 6.7 1 23 424 447 424 447 0.97

13 17 0.018 1.2 10.7 0.4 1 23 453 476 453 476 0.96

14 17 0.0048 0.32 12.5 4.3 1 23 482 505 482 505 0.97

15 17 0.00046 0.03 15.7 3.8 1 23 511 533 511 533 0.98

16 17 0.11 7.3 8.2 4.5 3 23 541 561 541 562 0.96

17 17 0.038 2.5 9.7 0.5 1 23 568 591 568 591 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00013	0.0087	17.4	2.3	1	23	106	129	106	129	0.96
2	17	0.017	1.2	10.7	3.4	1	23	135	157	135	157	0.98
3	17	0.00042	0.028	15.8	2.1	1	23	163	186	163	186	0.94
4	17	0.0025	0.17	13.4	4.2	1	23	192	215	192	215	0.97
5	17	0.00018	0.012	17.0	3.2	1	23	221	243	221	243	0.98
6	17	0.0015	0.099	14.1	1.4	1	23	249	272	249	272	0.96
7	17	0.0011	0.074	14.5	0.5	1	23	278	301	278	301	0.96
8	17	0.0033	0.22	13.0	3.1	3	23	309	330	307	330	0.97
9	17	0.00012	0.0078	17.6	0.3	3	23	338	358	336	358	0.98
10	17	0.00081	0.054	14.9	0.8	3	23	366	387	364	387	0.96
11	17	0.011	0.73	11.4	1.6	1	23	393	416	393	416	0.95
12	17	0.0027	0.18	13.3	6.7	1	23	424	447	424	447	0.97
13	17	0.018	1.2	10.7	0.4	1	23	453	476	453	476	0.96
14	17	0.0048	0.32	12.5	4.3	1	23	482	505	482	505	0.97
15	17	0.00046	0.03	15.7	3.8	1	23	511	533	511	533	0.98
16	17	0.11	7.3	8.2	4.5	3	23	541	561	541	562	0.96
17	17	0.038	2.5	9.7	0.5	1	23	568	591	568	591	0.91

Sequence Information

Coding Sequence: ATGGAGCAAAAGATACTGCTGGAAGAATCTGAAACCAAATATTTGGTAGAAAATGGCGATTTTCTTCCAGATATGTGCAATTCAAAtggtatttttgaaattaaaaaggaAGAAATAGAAGATATAAAATTCAACTTGGAAGACTTCCATCATGCAATTGATATCAAAGAAGATAGCTCTGTTCTGGAATCTCAATTGAAGGATGAACGTCAAAAACAAGTACTCCAACAGATTAAGACTGAGGTTGGTTTGGTTAATGTTGATAATAACTTTTGTACTCAATCACAACTGAGAACTGATTCTGTCAAAAAACAATTTGcatgtgatatttgtgactataactGTTCAAAGAAGTCAAAACTGAAAGAGCATATGAAGTTAATTCATAAGGGCGATGAACCATTCACCTGCCAAATTTGTGATTATACATGTCTACAAAAATATAGGTTAAAAGAGCATATGATTAgtcatactggcgaaaaaccatttgaatgtaaAGATTGTGACTATAAAACAGCATTCAAAAGTCAGTTGAAACGGCATAACATCAGAACCCACAGCGGGGACAACCCTTTTGCATGTGCAGTTTGTGATTATAGATGTTCTTTCAAACATCAGCTGAAGCTGCATATTATGACTTACCACACAGGGGAGATACCGTTTGAGTGTGtcatttgtgattataaatgttcaTTCAAATATCAGTTGACAGCGCATATGACTAGGCACACCGGGGATAAACCGTTCGCCtgtcaaatttgtgactacaactGCATATATAAACAACAGTTGAAACTGCATATTATGATCCAACACACAGGCGAAACACCGTTTAAATGTGAAGATTGTGACTATAAAACAGCAATCAAAAGTCAGTTAAAAGTACATAATATGAGAGCtcacaccggggaaaaacccTTTGGATGTGAAGTCTGTGACTATAGATGTTCAGGCAAACATCAGTTGAAACTGCACATTATGACTAATCACACTGGGGAAAGACCGTTTggatgtgaaatttgtgactataaaactGCCGTCAAATATCAGTTGAAAGTGCATATGAGAAGCCACACCGGAGAGAAACCGATAGCCTGCGGAGTTTGTGACTATAGGTGTTCCTACAATCGTGATTTGAAACTGCATATTATGACTAAtcacaccggtgagaaaccaTTTGAATGCCATATTTGTGAATATAAAACGACTTTAAAAGCTCAGTTAAAATTGCACAACATGAGAGCTCACAGCGCCAGTGGCGGTAAGCGTTTTGCGTGTCACGTTTGTGACTTTCGATGTTCGTACAAACATCAGTTGAAACTGCATATTATGACACTTCACACTGCCgaaaaaccgtttgaatgtgaactttgtgactataaaacAGCAGTCAAACGTCAATTGGAACTACACAAGATCAGGAGCCACTCcagtgagaaaccgtttgcgtgtgaAGTGTGCGACTTTCGATGTTCATACAATCACAAGTTGAAGCTGCACATTATGACTAAtcacaccggggaaaaaccgtttgaatgtGAAGTATGTGACTATCGGTGTTCACTCAAACATCAGTTGAAAGTGCATATGGCAAAGCAcaccggcgaaaaaccgttgggatgtgaagtttgtgactttaaatgtgtGTACAAATATCAGATGAAAAAGCATATTGTTAGGCATCATACCGGCAAGAAATTGTTTAAATGTGAAGCTTGTGACTATAAAACAGTGTTCAAAAGTCGATTGAAAGCACATATTGTCGGAACCCACCCCGGCGTGAAACCGTTTGCATttgaagtttgtgactataaaattTCAGTGTGA
Protein Sequence: MEQKILLEESETKYLVENGDFLPDMCNSNGIFEIKKEEIEDIKFNLEDFHHAIDIKEDSSVLESQLKDERQKQVLQQIKTEVGLVNVDNNFCTQSQLRTDSVKKQFACDICDYNCSKKSKLKEHMKLIHKGDEPFTCQICDYTCLQKYRLKEHMISHTGEKPFECKDCDYKTAFKSQLKRHNIRTHSGDNPFACAVCDYRCSFKHQLKLHIMTYHTGEIPFECVICDYKCSFKYQLTAHMTRHTGDKPFACQICDYNCIYKQQLKLHIMIQHTGETPFKCEDCDYKTAIKSQLKVHNMRAHTGEKPFGCEVCDYRCSGKHQLKLHIMTNHTGERPFGCEICDYKTAVKYQLKVHMRSHTGEKPIACGVCDYRCSYNRDLKLHIMTNHTGEKPFECHICEYKTTLKAQLKLHNMRAHSASGGKRFACHVCDFRCSYKHQLKLHIMTLHTAEKPFECELCDYKTAVKRQLELHKIRSHSSEKPFACEVCDFRCSYNHKLKLHIMTNHTGEKPFECEVCDYRCSLKHQLKVHMAKHTGEKPLGCEVCDFKCVYKYQMKKHIVRHHTGKKLFKCEACDYKTVFKSRLKAHIVGTHPGVKPFAFEVCDYKISV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292391;
90% Identity: iTF_01292391;
80% Identity: -