Rful004831.1
Basic Information
- Insect
- Rhagonycha fulva
- Gene Symbol
- -
- Assembly
- GCA_905340355.1
- Location
- HG996554.1:4615861-4617657[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0041 0.12 13.7 2.6 1 23 96 119 96 119 0.90 2 17 0.85 25 6.4 4.4 1 23 125 147 125 147 0.96 3 17 0.0045 0.13 13.6 2.2 1 23 153 176 153 176 0.94 4 17 0.0053 0.15 13.4 5.2 1 23 182 205 182 205 0.97 5 17 0.00037 0.011 17.0 3.2 1 23 211 233 211 233 0.98 6 17 0.0031 0.089 14.1 1.4 1 23 239 262 239 262 0.96 7 17 0.014 0.41 12.1 0.3 1 23 268 291 268 291 0.95 8 17 0.0071 0.21 13.0 3.2 3 23 299 320 297 320 0.97 9 17 0.00024 0.007 17.6 0.3 3 23 328 348 326 348 0.98 10 17 0.0014 0.04 15.2 0.8 3 23 356 377 354 377 0.96 11 17 0.023 0.65 11.4 1.6 1 23 383 406 383 406 0.95 12 17 0.0055 0.16 13.3 6.7 1 23 414 437 414 437 0.97 13 17 0.036 1.1 10.8 0.4 1 23 443 466 443 466 0.95 14 17 0.0098 0.28 12.5 4.3 1 23 472 495 472 495 0.97 15 17 0.00094 0.027 15.8 3.8 1 23 501 523 501 523 0.98 16 17 0.018 0.51 11.8 4.4 3 23 531 551 531 552 0.96 17 17 0.57 16 7.0 0.5 1 23 558 581 558 581 0.91
Sequence Information
- Coding Sequence
- ATGGATCAAAAGATACTGCTGGAAGAATGCGAAACCAAATATTTGGAAGAAAATTGCGATTTTCTTTCAAATATCTGCAATTCGAATGGTATTTTTGAAATTAAAAAGGAAGAAATTGAGGAGGTAAAATTCGACTTGGAAGACTTCCATCATGCAATTGACATCAAAGAAGAGAACTTGGTTTTGGAATCTCAGCTAAAGGATGAACGTCAGATGATTAAGACTGAGGTTTGTTTCTTTAATTGTAATCAGTCACAACTGACAACTGAATCTGTCAAAAAACAATTTGCATGTGATATTTGTGACTATAACTGTTCGAGGAAGTCAAAACTGAAAGAGCATTTTGAGCTAAATCATAAGGGGGATAAATCATTTGCCTGTCAAATTTGTGACTATAAGTGTTTACAAAAATGTCGGTTAAAAGCGCATATGATTAGTCACACTGGCGAAAAACCGTTTGAATGTCAAAATTGTGACTATAAGACGGCGTTCAAAAGTCAGTTAAAACGGCATAACATCAGAACCCACAGCGGCGATAACCCTTTTTCATGTGCAGTTTGTGACTATAGATGTTCTTTCAAACATCAGTTGAAGCTGCATATTATGACTTACCACACCGGGGAAATTCCGTTTGAATGTGTCATTTGTGACTATAAATGTTCATTCAAATATCAGTTGACAGCGCATATGACTAGGCACACCGGGGAAAAACCGTTTGCTTGTCAAATTTGTGACTACAACTGCATATATAAGCAACAGTTGAAACTGCATATTATGATCCAGCACACAGGCGAAACACCGTTCGAATGTGAACTTTGTGACTATAAAACAGCAATCAAAAGTCAGTTGAAAGTGCATAATATGAGAGCTCACACCGGGGAAAAACCTTTTGGATGTGACGTTTGTGACTATAGGTGCTCAGGCAAACATCAGTTGAAACTGCATATTATGACTAATCACACTGGGGAAAGACCGTTTGGATGTGAAATTTGTGACTATAAAACTGCGGTTAAATATCAGTTAAAAGTGCATATGAGAAGCCACACCGGAGAAAAACCGATAGCCTGCGCAATTTGTGACTATAGGTGCTCTTACAACCGTGATTTGAAGCTGCATATTATGACTAACCACACCGGTGAAAAACCTTTCGAATGCCATATTTGTGAATATAAAACTACACTGAAAGCTCAGTTAAAATTGCACAACATGAGGGCTCACAGCGCCAGTGGCGGGAAGCGTTTTGCGTGTCACGTTTGTGACTTTCGATGTTCCTACAAACATCAGTTGAAACTGCATATTATGACACTTCACACCGTCGAAAAACCGTTCGAATGTGAAGATTGTGACTATAAAACAGCAATCAAACGTCAGTTGGAACTACACAAGATCAGAAGCCACTCCAGTGAAAAACCGTTCGCGTGTGAAGTGTGCGACTTTAGATGTTCATACAACCACAAGTTGAAGCTTCACATTATGACTAATCACACCGGGGAAAAACCGTTTGAATGTGAAGTTTGTGACTATAGGTGTTCACTCAAACATCAGTTGAAAGTGCACATGGCAAAGCACACAGGTGAAAAACCGTTGGGATGTGAAATTTGTGACTTTAAATGTGTGTACAAATATCAGTTGAAAAAGCATATTGTTCGGCATCACACCGGAAAGAAATTGTTTAAATGTGAAGCTTGTGACTATAAAACAGTATTTAAAAGCCGGCTGAAAGGACATATTGTCGGAACCCACCCCGGCGTGAAACCGTTTGCATTTGAAGTTTGTGACTATAAAATTTCAGTGTAA
- Protein Sequence
- MDQKILLEECETKYLEENCDFLSNICNSNGIFEIKKEEIEEVKFDLEDFHHAIDIKEENLVLESQLKDERQMIKTEVCFFNCNQSQLTTESVKKQFACDICDYNCSRKSKLKEHFELNHKGDKSFACQICDYKCLQKCRLKAHMISHTGEKPFECQNCDYKTAFKSQLKRHNIRTHSGDNPFSCAVCDYRCSFKHQLKLHIMTYHTGEIPFECVICDYKCSFKYQLTAHMTRHTGEKPFACQICDYNCIYKQQLKLHIMIQHTGETPFECELCDYKTAIKSQLKVHNMRAHTGEKPFGCDVCDYRCSGKHQLKLHIMTNHTGERPFGCEICDYKTAVKYQLKVHMRSHTGEKPIACAICDYRCSYNRDLKLHIMTNHTGEKPFECHICEYKTTLKAQLKLHNMRAHSASGGKRFACHVCDFRCSYKHQLKLHIMTLHTVEKPFECEDCDYKTAIKRQLELHKIRSHSSEKPFACEVCDFRCSYNHKLKLHIMTNHTGEKPFECEVCDYRCSLKHQLKVHMAKHTGEKPLGCEICDFKCVYKYQLKKHIVRHHTGKKLFKCEACDYKTVFKSRLKGHIVGTHPGVKPFAFEVCDYKISV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01294159;
- 90% Identity
- iTF_01294159;
- 80% Identity
- -