Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294038.1:22479052-22480563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00055 0.037 15.5 0.5 2 23 88 109 87 109 0.97

2 15 2.7e-05 0.0018 19.6 2.4 1 23 115 137 115 137 0.98

3 15 0.00039 0.026 15.9 1.8 1 23 143 165 143 165 0.98

4 15 0.0024 0.16 13.5 1.7 1 23 171 193 171 193 0.97

5 15 0.0098 0.65 11.5 4.1 1 23 200 222 200 222 0.97

6 15 0.00095 0.063 14.7 3.5 1 23 228 250 228 250 0.97

7 15 0.00091 0.06 14.8 1.4 1 23 256 278 256 278 0.97

8 15 1.1 71 5.1 5.2 1 23 283 305 283 305 0.97

9 15 0.00021 0.014 16.8 0.4 1 23 311 333 311 333 0.97

10 15 4.4e-05 0.0029 18.9 1.6 1 23 339 361 339 361 0.99

11 15 3e-05 0.002 19.5 1.8 1 23 367 389 367 389 0.98

12 15 0.00035 0.024 16.1 1.1 1 23 395 417 395 417 0.97

13 15 0.0018 0.12 13.8 1.0 3 23 425 445 423 445 0.98

14 15 0.0009 0.06 14.8 3.7 1 23 451 473 451 473 0.99

15 15 8.1e-05 0.0054 18.1 0.4 1 23 479 501 479 501 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00055	0.037	15.5	0.5	2	23	88	109	87	109	0.97
2	15	2.7e-05	0.0018	19.6	2.4	1	23	115	137	115	137	0.98
3	15	0.00039	0.026	15.9	1.8	1	23	143	165	143	165	0.98
4	15	0.0024	0.16	13.5	1.7	1	23	171	193	171	193	0.97
5	15	0.0098	0.65	11.5	4.1	1	23	200	222	200	222	0.97
6	15	0.00095	0.063	14.7	3.5	1	23	228	250	228	250	0.97
7	15	0.00091	0.06	14.8	1.4	1	23	256	278	256	278	0.97
8	15	1.1	71	5.1	5.2	1	23	283	305	283	305	0.97
9	15	0.00021	0.014	16.8	0.4	1	23	311	333	311	333	0.97
10	15	4.4e-05	0.0029	18.9	1.6	1	23	339	361	339	361	0.99
11	15	3e-05	0.002	19.5	1.8	1	23	367	389	367	389	0.98
12	15	0.00035	0.024	16.1	1.1	1	23	395	417	395	417	0.97
13	15	0.0018	0.12	13.8	1.0	3	23	425	445	423	445	0.98
14	15	0.0009	0.06	14.8	3.7	1	23	451	473	451	473	0.99
15	15	8.1e-05	0.0054	18.1	0.4	1	23	479	501	479	501	0.97

Sequence Information

Coding Sequence: ATGAATGAGATGCTATCGGAAGagttagaaaatttgaaaaaatctgTTGAAGGCTTTCCACCTATATGccatgttaatattaaatgcgAAATTCAAGCAGAAGAGGAGGATATGGAAGTCAAGTTAGAAGAGGAAGAAATGGAAATCAAATTGGAAgagaaaaatatgaaaatcgAATTGGAAGATCTGCACCATGCTATTGACATAAAAGAAGAGATTGTACCTTTGGGTTCTCAAGCGGCTGGAGAACCAGAAAAATTGGTATGCAATATTTGTAACGGAAAATTTGCTAACAAATTAACTTTGAAAAAGCATGCCCAAACCCACACGGGCGATAAACCCTTTAGGTGCaatatttgtgattacaaaacttcctataaatataatttgatgCTTCACTTACGAAATCATACCGGCGACAAACCATTCTCATGCGAACTATGCAACTTTAAGTCGTCGTTTAAAAGTAGCTTAAACGTTCACGTAAGAACTCACACGGGCGAGAAACCCTTCGCGTGTGAAATGTGCGACTTTAAATGTGCTCGTAAGACAGGATTACAACTTCACGTTAAAAGCCACTCTGGTTGCGAAAAACCATTcgtgtgtgaaatttgcgacttcaAATGTGCCCATCAAAGAACGTTTCGAGAGCACTTAAAAGcgcatactggtgagaaaccgttttcaTGTGAAATTTGCCACTGGAAGTGTGCAACcaaagataaattaaaattgcatttaacgATCcacaccggcgaaaaaccatttgcgtGCAAATTTTGTGACTTAAAATTTGCGCTAAAACGATATTTGTCTGTTCACTTGAAAACTCATACCGATAAACCGTTCGCATGTGAATTTTGCGAGTATAAATGTGCCCATAGAAGAAGAATAAGGGATCACATCCGCAAGcataccggggagaaaccgtttgcatgTGATATTTGCGACTTTAAATCCGCACAAAAGGCAAAATTACAGCTGCATTTAAGGACTCATACTGGAGAACAGCGGTTTACATGCGAATTTTGCGAACTTAAATTTTCCCAGAAAGAGAAATTTGCTGCTCACTTAAGGACCCACTCTGGAGAAAGTTCTTTtatgtgtgaaatttgtggacTGAAATGTACAACCAAAGATGAGTTAAAACTGCACTTAACGACGCATACTGGCGAAGTTCCGTTTGCCTGTACATTTTGCGACTTGAAGTTTGCACTCAAAACATATTTGAATGTTCATTTGAAAACCCATGCTGGTGAAAAGCCATTTgggtgtgaaatttgcgactataaatgttcTGAGAAAAGAACACTAGAAGAGCACGTAAGGGtccatactggtgagaaaccgtatAAATGTGGAATTTGTAAGTTTCGAACTGCACATAAAAGAAGCCTAAAAGTTCATGTCAGGAAGCATTCGGGTATCAAACCGTTTGCGTGTGAAATGTGCGATTATAGAGGTTCACAAAAATCGCTCTTGGTGcgacatttaaaaatgcatcCTCATTAG
Protein Sequence: MNEMLSEELENLKKSVEGFPPICHVNIKCEIQAEEEDMEVKLEEEEMEIKLEEKNMKIELEDLHHAIDIKEEIVPLGSQAAGEPEKLVCNICNGKFANKLTLKKHAQTHTGDKPFRCNICDYKTSYKYNLMLHLRNHTGDKPFSCELCNFKSSFKSSLNVHVRTHTGEKPFACEMCDFKCARKTGLQLHVKSHSGCEKPFVCEICDFKCAHQRTFREHLKAHTGEKPFSCEICHWKCATKDKLKLHLTIHTGEKPFACKFCDLKFALKRYLSVHLKTHTDKPFACEFCEYKCAHRRRIRDHIRKHTGEKPFACDICDFKSAQKAKLQLHLRTHTGEQRFTCEFCELKFSQKEKFAAHLRTHSGESSFMCEICGLKCTTKDELKLHLTTHTGEVPFACTFCDLKFALKTYLNVHLKTHAGEKPFGCEICDYKCSEKRTLEEHVRVHTGEKPYKCGICKFRTAHKRSLKVHVRKHSGIKPFACEMCDYRGSQKSLLVRHLKMHPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01292191;
90% Identity: iTF_01292191;
80% Identity: -