Basic Information

Insect: Rhagonycha fulva
Gene Symbol: -
Assembly: GCA_905340355.1
Location: HG996554.1:102864651-102866132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0015 0.045 15.1 0.4 2 23 79 100 78 100 0.97

2 15 6.8e-05 0.002 19.3 2.9 1 23 106 128 106 128 0.98

3 15 0.001 0.03 15.6 2.2 1 23 134 156 134 156 0.97

4 15 0.0041 0.12 13.7 1.6 1 23 162 184 162 184 0.97

5 15 0.02 0.58 11.6 4.1 1 23 190 212 190 212 0.97

6 15 0.0021 0.061 14.6 2.6 1 23 218 240 218 240 0.96

7 15 0.00018 0.0052 18.0 1.2 1 23 246 268 246 268 0.99

8 15 1.4 42 5.7 5.4 1 23 273 295 273 295 0.97

9 15 0.00043 0.012 16.8 0.4 1 23 301 323 301 323 0.97

10 15 8.9e-05 0.0026 19.0 1.6 1 23 329 351 329 351 0.99

11 15 6.1e-05 0.0018 19.5 1.8 1 23 357 379 357 379 0.98

12 15 0.00063 0.018 16.3 1.3 1 23 385 407 385 407 0.97

13 15 0.007 0.2 13.0 0.7 3 23 415 435 413 435 0.98

14 15 0.0018 0.053 14.8 3.7 1 23 441 463 441 463 0.99

15 15 9.2e-05 0.0027 18.9 0.5 1 23 469 491 469 491 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0015	0.045	15.1	0.4	2	23	79	100	78	100	0.97
2	15	6.8e-05	0.002	19.3	2.9	1	23	106	128	106	128	0.98
3	15	0.001	0.03	15.6	2.2	1	23	134	156	134	156	0.97
4	15	0.0041	0.12	13.7	1.6	1	23	162	184	162	184	0.97
5	15	0.02	0.58	11.6	4.1	1	23	190	212	190	212	0.97
6	15	0.0021	0.061	14.6	2.6	1	23	218	240	218	240	0.96
7	15	0.00018	0.0052	18.0	1.2	1	23	246	268	246	268	0.99
8	15	1.4	42	5.7	5.4	1	23	273	295	273	295	0.97
9	15	0.00043	0.012	16.8	0.4	1	23	301	323	301	323	0.97
10	15	8.9e-05	0.0026	19.0	1.6	1	23	329	351	329	351	0.99
11	15	6.1e-05	0.0018	19.5	1.8	1	23	357	379	357	379	0.98
12	15	0.00063	0.018	16.3	1.3	1	23	385	407	385	407	0.97
13	15	0.007	0.2	13.0	0.7	3	23	415	435	413	435	0.98
14	15	0.0018	0.053	14.8	3.7	1	23	441	463	441	463	0.99
15	15	9.2e-05	0.0027	18.9	0.5	1	23	469	491	469	491	0.97

Sequence Information

Coding Sequence: ATGAATGAGATGCTCTCGGAAGAGTTAGAAAATTCGGGAAAGTCTGTTGAAGGCTTTCCACCTATATGCAATGTGACTATCAAATGCGAAATTACAGCAGAAGAGGAAGATATGGAAATGAAGTTAGAAAACGAAGAAGTGGAAATCAAATTAGAGGATCTGCACCATGCTATTGACATAAAAGAAGAGATTTTACCATTGGGTTCTCAAGCAACTGGAGAGTCAGAAAAATTGGTATGCGATATTTGTAACGGAAAATTTGCTAATAAATTAACTTTGAAAAAGCATGCCCAAACCCACACTGGCGACAAACCCTTTAAGTGCAATATTTGTAATTACAGAACTTCCTATAAATATAATTTGATGCTTCATTTAAGAAATCATACCGGCGACAAACCTTTCGCATGCAAACTTTGTAATTTTAAATCGTCATTTAAAAGTAGCTTAAAAGTTCACGTAAGAACTCACACTGGTGAGAAACCCTTTGCGTGTGAAATGTGCGACTTTAGATGTGCCCGAAAGACAGGATTACAGCTTCACGTTAAAAGTCATGCTGGTGAGAAACCATTTGTTTGTGAAATTTGTGACTTCAAATGTGCCCATCAAAGAACATTTCGCGAACACTTAAAAGCTCATACTGGTGAGAAACCGTTTGCATGTGAAATTTGCCACTGGAAGTGTGCAACTAAAGATAAATTAAAATTGCATTTAACGATTCATACCGGCGAAAAACCGTTTACCTGCAAAGTTTGTGACTTAAAGTTTGCTTTAAAACGATATTTGTCCGCTCACTTGAAAACTCATACCGATAAACCGTTTGCATGTGAGTTTTGCGAGTATAAATGTGCCCATAAAAGAAGGATCCGGGATCACATCCGGAAGCACACCGGGGAAAAACCGTTCGCATGTGATATTTGCGACTTTAAATCTGCACAGAAGGCAAAATTGCAGCTGCATTTAAGGACTCACACTGGAGAACAGCGGTTTACGTGTGAATTTTGCGAACTTAAGTTTTCTCAAAAAGAGAAATTTGCTGCTCACTTAAGGACTCACTCTGGAGAGAGCTCATTTATGTGTGAAATTTGTGGACTGAAGTGTACAACCAAAGATGAGTTAAAATTGCATTTGACGACGCATACTGGGGAAGTTCCGTTTGCCTGCAAATTTTGCGACTTGAAGTTTGCACTCAAAACATATCTGAATGTTCACTTAAAAACCCATGGTGGGGAAAAACCATTTGGGTGTGAAATTTGCGACTATCAATGTTCTGAGAAAAGAACACTGGAAGAGCACGTAAGGGTCCATACTGGTGAAAAACCGTATAAATGTGGAATTTGCAAGTTTCGAACCGCACATAAAAGAAGCTTAAAAGTTCATGTCAGGAAGCATTCGGGCATCAAACCTTTTGCTTGTGAAATGTGCGACTATAGAGGTTCACAAAAATCGCTCTTGGTACGACACTTAAAAACGCATCCTCATTAG
Protein Sequence: MNEMLSEELENSGKSVEGFPPICNVTIKCEITAEEEDMEMKLENEEVEIKLEDLHHAIDIKEEILPLGSQATGESEKLVCDICNGKFANKLTLKKHAQTHTGDKPFKCNICNYRTSYKYNLMLHLRNHTGDKPFACKLCNFKSSFKSSLKVHVRTHTGEKPFACEMCDFRCARKTGLQLHVKSHAGEKPFVCEICDFKCAHQRTFREHLKAHTGEKPFACEICHWKCATKDKLKLHLTIHTGEKPFTCKVCDLKFALKRYLSAHLKTHTDKPFACEFCEYKCAHKRRIRDHIRKHTGEKPFACDICDFKSAQKAKLQLHLRTHTGEQRFTCEFCELKFSQKEKFAAHLRTHSGESSFMCEICGLKCTTKDELKLHLTTHTGEVPFACKFCDLKFALKTYLNVHLKTHGGEKPFGCEICDYQCSEKRTLEEHVRVHTGEKPYKCGICKFRTAHKRSLKVHVRKHSGIKPFACEMCDYRGSQKSLLVRHLKTHPH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01294127;
90% Identity: iTF_01294127;
80% Identity: -