Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294036.1:66247132-66251110[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.2e-05 0.0015 19.9 0.2 1 23 176 198 176 198 0.98

2 12 0.0078 0.52 11.9 0.4 1 23 204 226 204 226 0.96

3 12 3.2e-05 0.0021 19.4 3.1 1 23 232 254 232 254 0.98

4 12 0.00026 0.017 16.5 1.4 3 23 268 288 266 288 0.95

5 12 0.005 0.33 12.5 0.3 2 23 295 316 294 316 0.97

6 12 4e-06 0.00026 22.2 1.2 1 23 322 344 322 344 0.98

7 12 1.2e-05 0.00083 20.6 0.2 1 23 350 372 350 372 0.96

8 12 8.1e-06 0.00054 21.2 0.1 1 23 378 400 378 400 0.98

9 12 2.9e-07 1.9e-05 25.8 2.1 1 23 406 428 406 428 0.99

10 12 2e-06 0.00013 23.2 3.6 1 23 434 456 434 456 0.97

11 12 3.1e-06 0.00021 22.6 0.1 3 23 464 484 463 484 0.98

12 12 0.00011 0.0073 17.7 0.2 1 23 490 512 490 512 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.2e-05	0.0015	19.9	0.2	1	23	176	198	176	198	0.98
2	12	0.0078	0.52	11.9	0.4	1	23	204	226	204	226	0.96
3	12	3.2e-05	0.0021	19.4	3.1	1	23	232	254	232	254	0.98
4	12	0.00026	0.017	16.5	1.4	3	23	268	288	266	288	0.95
5	12	0.005	0.33	12.5	0.3	2	23	295	316	294	316	0.97
6	12	4e-06	0.00026	22.2	1.2	1	23	322	344	322	344	0.98
7	12	1.2e-05	0.00083	20.6	0.2	1	23	350	372	350	372	0.96
8	12	8.1e-06	0.00054	21.2	0.1	1	23	378	400	378	400	0.98
9	12	2.9e-07	1.9e-05	25.8	2.1	1	23	406	428	406	428	0.99
10	12	2e-06	0.00013	23.2	3.6	1	23	434	456	434	456	0.97
11	12	3.1e-06	0.00021	22.6	0.1	3	23	464	484	463	484	0.98
12	12	0.00011	0.0073	17.7	0.2	1	23	490	512	490	512	0.96

Sequence Information

Coding Sequence: atggaTATGACCCCATATCTTACGGCTCCTTTACAGCTAGACAAAATTTGTAGGGCTTGTTTGACCGAAAAAGGAGATATGCGTCCCCTTTTTGGAGCCTGCCTTGATGAAATGTTGGTTTCGTTTGCTGGTATTgaggtTAGTGAAAATGACGGCTTTCCAAATCTCATGTGCGTTCAATGCGTTCTGCAGTGCAGTCGAGCTTATACATTTAAACAGCAATGTGAAAAATCAGATAACATTTTACGACAATACCTGAGTGCAGAATTTCAGGAACAACTCAAGACCATTATGGTCAATAGTTTGAAGGAGGATCACATAGATAATCAACTTGCTTATGAAGATCAATCGGAAACTGTTATAACAGAAGAAATGCAAACTGAATTAGTAAATGTCAGTTATGCAGAAGATGGGACCTACAAAATTGagGTTAAAGGCGATATCTACAATGTAGCTCCAGATGGaacaaatttagaaaaacaagAACCAGTTACTAATAAACCTGAAAGAAGCCAAAAATACAAATATCCTTGTACCAAATGTGAAGAGTCATTTCCACTTAAAGTTGATTTAAAGgtACATATGATGAGTCACCCTAAGGAACTCGATCACATTTGTCTTATTTGTAATAAAGGCTTCCCTGAAGCTAGAATTTTGAAACGTCACCTCAAAATTCACTTGGATAAAAAGCCCCATCAGTGTGATCAGTGCGATATGTCATTTGCAGAAAGTTCAAATTTGAGTAAGCACAAAAAGAAGCACACCGGCGAATTACGTAATATCAAGGGAAAGCCACATTTGTGCTCCGTTTGCGGAAGAGCATTTAAGTGGGCCTCAAGTTTATCGAAGCACATGAAGTACCACACTGGGCATAAATTATTGACTTGCGAATATTGTAGTAATCAGTACGTAGAGGCCAGAAGTTTAAGGATACATATTAGATCACACACCGGTGAGAGACCTTATATTtgtgaaatttgtcagaaagGTTTTACTCAAGTGTGTaatcttgaaaaacatttacgCGTACATACTGGAGAAAAGCCATTTTTGTGTCCGACTTGTGGTAAAGgATTTACTCAATCGGGTTATGTTGGGATACATATGagaactcacacaggtgaaCGGCCATACGTGTGTTCCACTTGTGGTAAAGCATTTGCTGGTTCTAATACACTTGCCATACATCAACGCattcatactggtgagaaaccttACACTTGTAATATATGTGGTAAATCCTTCAGTAGGCACGAAACTTTGGTCATTCATACAAGGTCACACACCGGCGATAAACCTCATATTTGTTCAGTATGTAACAAGGGATTTACATCATCTGGACATCTTTCGAGTCATATGagaactcatactggcgaaaaaccTCACGGTTGTGAAGTATGTGGGAAAAGGTTTGCCGGATCTAGCAGCTTAAAAGTACACATGCGGGGTCATTCCAGTGAAAAACCTTACATCTGCAAGTTGTGTAACAAAGGATTTGTACAATCGATTGCTCTTCAACAGCATCTTGGTTCCCATGCTATTATCGCCAAGTCTAAGTTACCTAAATCAGAATCTCTAGAAGTTACAGATTTAATGTAA
Protein Sequence: MDMTPYLTAPLQLDKICRACLTEKGDMRPLFGACLDEMLVSFAGIEVSENDGFPNLMCVQCVLQCSRAYTFKQQCEKSDNILRQYLSAEFQEQLKTIMVNSLKEDHIDNQLAYEDQSETVITEEMQTELVNVSYAEDGTYKIEVKGDIYNVAPDGTNLEKQEPVTNKPERSQKYKYPCTKCEESFPLKVDLKVHMMSHPKELDHICLICNKGFPEARILKRHLKIHLDKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLTCEYCSNQYVEARSLRIHIRSHTGERPYICEICQKGFTQVCNLEKHLRVHTGEKPFLCPTCGKGFTQSGYVGIHMRTHTGERPYVCSTCGKAFAGSNTLAIHQRIHTGEKPYTCNICGKSFSRHETLVIHTRSHTGDKPHICSVCNKGFTSSGHLSSHMRTHTGEKPHGCEVCGKRFAGSSSLKVHMRGHSSEKPYICKLCNKGFVQSIALQQHLGSHAIIAKSKLPKSESLEVTDLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01345867;
90% Identity: iTF_01292102;
80% Identity: -