Basic Information

Insect: Rhagonycha lutea
Gene Symbol: -
Assembly: GCA_958510855.1
Location: OY294040.1:12803322-12809890[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.049 3.2 9.3 4.1 1 20 144 163 144 166 0.95

2 12 7.1e-05 0.0047 18.3 1.4 3 23 174 194 173 194 0.98

3 12 6.6e-06 0.00044 21.5 1.1 3 23 202 222 200 222 0.98

4 12 0.00026 0.017 16.5 0.5 3 23 230 250 228 250 0.96

5 12 2.3e-06 0.00015 23.0 0.2 2 23 257 278 256 278 0.97

6 12 5.2e-05 0.0035 18.7 2.9 1 23 284 306 284 306 0.98

7 12 7.6e-06 0.00051 21.3 2.1 1 23 312 334 312 334 0.96

8 12 2.6e-06 0.00018 22.8 0.4 1 23 340 362 340 362 0.99

9 12 1.3e-06 8.8e-05 23.7 0.3 1 23 368 390 368 390 0.98

10 12 8.7e-08 5.8e-06 27.4 2.5 1 23 396 418 396 418 0.99

11 12 4.2e-05 0.0028 19.0 0.8 1 23 424 446 424 446 0.97

12 12 4.4e-06 0.0003 22.1 0.2 1 23 452 474 452 474 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.049	3.2	9.3	4.1	1	20	144	163	144	166	0.95
2	12	7.1e-05	0.0047	18.3	1.4	3	23	174	194	173	194	0.98
3	12	6.6e-06	0.00044	21.5	1.1	3	23	202	222	200	222	0.98
4	12	0.00026	0.017	16.5	0.5	3	23	230	250	228	250	0.96
5	12	2.3e-06	0.00015	23.0	0.2	2	23	257	278	256	278	0.97
6	12	5.2e-05	0.0035	18.7	2.9	1	23	284	306	284	306	0.98
7	12	7.6e-06	0.00051	21.3	2.1	1	23	312	334	312	334	0.96
8	12	2.6e-06	0.00018	22.8	0.4	1	23	340	362	340	362	0.99
9	12	1.3e-06	8.8e-05	23.7	0.3	1	23	368	390	368	390	0.98
10	12	8.7e-08	5.8e-06	27.4	2.5	1	23	396	418	396	418	0.99
11	12	4.2e-05	0.0028	19.0	0.8	1	23	424	446	424	446	0.97
12	12	4.4e-06	0.0003	22.1	0.2	1	23	452	474	452	474	0.99

Sequence Information

Coding Sequence: ATGGATGTACCGCTTGAATTTTTGGATATTCAAAAAGTGTGCAGAGCCTGCTTATTTGAGAAGCAAGAAATGTATTCTATTTATGATGTTTCTGTTAGAGATATGTTTATATTCTGCACCTCTTTAAATGTTGACAATAGCGACAAATTACCGCCTTCAATATGTTTTCAATGTAAAACCGAATTGGATAGAGcatctttatttaaaaatttatgttttgaatCGAATTCCAAATTGCTTAGGTACCTAGAAAGTTGTGAGATTATTAACAGTGCTGCGCAAGAATTGGAAAATGCTTCTTCGGATAATTTAAACATTGGAAATGATTTAAGTGCACTGGACGACGCACTTGATTTAAATATTACCTACGTGGAAGAAAAATcgacaaagaaaaagaaaagaagaCGGAAAATAAAGAACTTGGGTTTGTTTAAGTGTGAGGTTTGCGAGGAAAGTTTCGATCTCCAGTGTGATTTTAATACCCATATGATTTGTCATCCTCAAAACGAGGTTCCTTTATGTACAATGTGTGATAAAAGATTTAATAACTTGAAAGTGTTGAAACGTCATGTACGCATTCACATGTTAAGTAAGCCGTTTGGTTGTGATTTGTGTCAAAAAAGCTTTTCGGAATCGGGTAGTTTAACGAGACACTTACGAAAGCATCGTGGTGAAAAAAGACATTTGTGTACGGTTTGTGGTAAAGGTTTTTATGAAGCAAACGTTTTGTCTATTCACATGAGAACTCATACCGGAGAGAAGCCCATCGAATGCAATGTTTGCAATAAAAGATTTGCCGATCCTAATGGTTTGCGCAGCCATATGAAGTCACACACCGGGGAGAAGAAATACGATTGTAAtatatgtaataaattattttcgcaTTCCTTTGTGCTAAAAAAACATTTGAGAGTTCACAGTGGAGAAAGGCCGTATTTGTGCTCCGTTTGTGGAAAATCCTTTACTCagAGCCATTACGTGTCTGTACATATGAGACAACACACAGGAGAATTACCATACACTTGCACTTGGTGCAATAAGGGTTTTGCTCAAAATAGTCAGTTGGATATGCATCTGAGAATTCACACAGGGGTAAAACCTTATATTTGTGCCGTTTGTGGAAAAGCATGTGCCAGATCTGGAGATTTATCTACCCACATGAGaactcataccggcgagaaaccattCAAATGCTCCATTTGTCCTAAACGTTACGTTACTTCCAGTCATCTTACCGTTCACATGAGAAGTCACAGCGGTGAGCGTACTCACATTTGTCTAACATGTGGCAGAGGTTTTACGGAATCGCAAGGTCTGAAAGCCCATCTTAGAACTCACACTGGAGAAAAACCATACACATGTACAATTTGTGGAAGCAGTTTTGCTCAATCAGGTGCACTGGCTACACATAGAAAAACTCACATAAAAGATATTAGTAactaa
Protein Sequence: MDVPLEFLDIQKVCRACLFEKQEMYSIYDVSVRDMFIFCTSLNVDNSDKLPPSICFQCKTELDRASLFKNLCFESNSKLLRYLESCEIINSAAQELENASSDNLNIGNDLSALDDALDLNITYVEEKSTKKKKRRRKIKNLGLFKCEVCEESFDLQCDFNTHMICHPQNEVPLCTMCDKRFNNLKVLKRHVRIHMLSKPFGCDLCQKSFSESGSLTRHLRKHRGEKRHLCTVCGKGFYEANVLSIHMRTHTGEKPIECNVCNKRFADPNGLRSHMKSHTGEKKYDCNICNKLFSHSFVLKKHLRVHSGERPYLCSVCGKSFTQSHYVSVHMRQHTGELPYTCTWCNKGFAQNSQLDMHLRIHTGVKPYICAVCGKACARSGDLSTHMRTHTGEKPFKCSICPKRYVTSSHLTVHMRSHSGERTHICLTCGRGFTESQGLKAHLRTHTGEKPYTCTICGSSFAQSGALATHRKTHIKDISN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00927951;
90% Identity: iTF_00927951;
80% Identity: -