Lyun007402.1
Basic Information
- Insect
- Lycocerus yunnanus
- Gene Symbol
- -
- Assembly
- GCA_036346125.1
- Location
- JARFIX010000013.1:3681843-3684232[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0024 0.26 13.0 1.6 1 23 143 165 143 165 0.98 2 12 3.9e-05 0.0042 18.7 1.0 3 23 173 193 172 193 0.98 3 12 2.2e-05 0.0023 19.5 0.5 3 23 201 221 199 221 0.98 4 12 0.00011 0.011 17.3 0.5 3 23 229 249 227 249 0.96 5 12 3.1e-06 0.00033 22.1 0.3 2 23 256 277 255 277 0.97 6 12 5.9e-05 0.0063 18.1 5.1 1 23 283 305 283 305 0.99 7 12 6.7e-06 0.00071 21.1 2.1 1 23 311 333 311 333 0.96 8 12 0.00015 0.016 16.8 2.1 1 23 339 361 339 361 0.98 9 12 3.3e-07 3.5e-05 25.2 0.4 1 23 367 389 367 389 0.98 10 12 6e-08 6.4e-06 27.5 2.7 1 23 395 417 395 417 0.99 11 12 2.6e-05 0.0028 19.2 1.2 1 23 423 445 423 445 0.97 12 12 7.3e-06 0.00077 21.0 0.1 1 23 451 473 451 473 0.99
Sequence Information
- Coding Sequence
- ATGGATGTACCGCTTGAATTTTTGGATGTTCAAAAAGTATGCAGAGCTTGCTTATTTGAGAAACAAGAAATGTATTCCATTTATGATATTGCAGTTAAAGATATGTTTATATTCTGCACTTCTTTAAACGTTGACAATAGCGACAAATTGCCGCCTTTAATATGTTTTCAATGTAAAACTGAACTGGATAAagcatatttgtttaaaaatttgtgtttcgAGTCGAATTCCAAATTGCTCAAGTACTTTGAAAGTTGTGAGATTATTAATAGTGCTGCACAAGAATTGGAAAATGCTTCTTCGGACAATTTAAACATTGAAAATGATTTGAGTGTATTGGATGACGCGCTCGATTTGAATAATACTTATACGGATGAAAAATCGacaaagaaaaaaagaagacgAAAACTAAGGAACGTGGGTTTGTTTAAATGTGAGGTGTGCGAGGAAAGCTTTGATTTAAAATGTGATTTCGACACCCATATGATTTCTCATCCCGAGAATGAGGTTCCTCTATGTACAGTTTGTGATAaaagatttaacaatttaaaagtattaaagaGGCATGTGCGCATTCATATGCTAAGTAAACCCTTCGGTTGTGATTTATGCGAAAAAGGTTTTTCAGAATCTGGTAGTTTAACGAGACATTTGAGAAAGCATCGTGGCGAAAAGAGACATTTGTGCACAATTTGTGGTAAAGGTTTTTATGAGGCAAACGTTTTGTCCATTCACATGAGAACTCATACCGGAGAGAAGCCGATTGAATGCAATGTGTGTAAGAAAAAGTTTGCCGATCCCAACGGTTTACGCAGTCATATGAAGTCACATACTGGGGAGAAGAACTACGAGTGTAATATTTGCCATAAATTATTTTCGCATTCCTTTGTGTTAAAGAAACATTTAAGAGTTCATAGTGGAGAAAGACCGTACTTGTGCTCCGTTTGTGGAAAATCCTTTACTCAGAGTCATTACGTATCTATACATATGAGACAACATACAGGAGAATTACCATACACTTGCACTTGTTGCAATAAAGCTTTCGCTCAAAATAGTCAGCTAGACATGCATCTGAGAATTCACACGGGAGTAAAACCTTACATATGTACGGTTTGTGGCAAAGCGTGCGCCAGATCTGGAGACTTAGTTACCCATATGAGAactcacaccggcgagaaaccattcAAATGCACCATTTGTCCTAAACGTTACGTTACTTCTAGTCATCTCACTGTTCACATGAGAAGTCACAGTGGGGAACGTACTCATATTTGTCGAACATGTGGCAGAGGTTTTACAGAATCGCAAGGTCTGAAAGCCCATCTTAGAACTCACACCGGAGAAAAACCGTATACTTGTGCAATTTGCGGAAACAGTTTTGCCCAATCAGGTGCACTGGCTACACATAGAAAAACTCACATAAAAGATATTATGAGtgtctaa
- Protein Sequence
- MDVPLEFLDVQKVCRACLFEKQEMYSIYDIAVKDMFIFCTSLNVDNSDKLPPLICFQCKTELDKAYLFKNLCFESNSKLLKYFESCEIINSAAQELENASSDNLNIENDLSVLDDALDLNNTYTDEKSTKKKRRRKLRNVGLFKCEVCEESFDLKCDFDTHMISHPENEVPLCTVCDKRFNNLKVLKRHVRIHMLSKPFGCDLCEKGFSESGSLTRHLRKHRGEKRHLCTICGKGFYEANVLSIHMRTHTGEKPIECNVCKKKFADPNGLRSHMKSHTGEKNYECNICHKLFSHSFVLKKHLRVHSGERPYLCSVCGKSFTQSHYVSIHMRQHTGELPYTCTCCNKAFAQNSQLDMHLRIHTGVKPYICTVCGKACARSGDLVTHMRTHTGEKPFKCTICPKRYVTSSHLTVHMRSHSGERTHICRTCGRGFTESQGLKAHLRTHTGEKPYTCAICGNSFAQSGALATHRKTHIKDIMSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00268804; iTF_00271532; iTF_01294093; iTF_00270129; iTF_01292081; iTF_00272980;
- 90% Identity
- iTF_00268804; iTF_00271532; iTF_01294093; iTF_00270129; iTF_01292081; iTF_00272980;
- 80% Identity
- -