Rlut004904.1
Basic Information
- Insect
- Rhagonycha lutea
- Gene Symbol
- -
- Assembly
- GCA_958510855.1
- Location
- OY294036.1:65976873-65982059[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.8 1.2e+02 4.4 2.8 2 23 183 204 182 204 0.94 2 16 1.1e-05 0.0007 20.9 4.5 1 23 209 231 209 231 0.98 3 16 0.0002 0.013 16.9 5.0 1 23 237 259 237 259 0.97 4 16 0.00018 0.012 17.0 0.9 1 21 265 285 265 286 0.94 5 16 5.4e-05 0.0036 18.6 0.6 1 23 293 315 293 315 0.97 6 16 0.00013 0.009 17.4 0.1 1 23 478 500 478 500 0.95 7 16 9.3e-05 0.0062 17.9 8.3 1 23 506 528 506 528 0.97 8 16 2e-05 0.0013 20.0 6.9 1 23 534 556 534 556 0.98 9 16 0.0002 0.013 16.8 0.2 2 23 563 585 562 585 0.95 10 16 0.0047 0.32 12.5 0.5 1 23 597 619 597 619 0.97 11 16 0.0087 0.58 11.7 5.6 1 23 625 647 625 647 0.97 12 16 3.5e-06 0.00023 22.4 0.5 1 23 654 676 654 676 0.96 13 16 4.5e-06 0.0003 22.0 1.2 1 23 682 704 682 704 0.98 14 16 6.6e-07 4.4e-05 24.7 0.9 3 23 712 732 710 732 0.96 15 16 0.00016 0.01 17.2 0.1 1 23 738 760 738 760 0.98 16 16 0.091 6 8.5 0.7 1 23 765 788 765 788 0.97
Sequence Information
- Coding Sequence
- ATggaaagttttgaatttgattttcataATATATGTCGATTGTGCAAAAGCACATCGGAATCGATGCGATCTTTATTCGAAACTTGCGATAAAAATGCAGCTTGTCCCCGCTTTGACGAGATGCTAATGGCCTGTACGGCACTTTCggtaaaTCTAGGAGATAATTTGCCAGATCAGGCTTGTCAAGTTTGCAttgataatttacaaatttcctacaatttcaAGCTACAATGCGAAAACACCGACATTTCTCTTCGTGATTATATCAAAAGTTTTAAGAGCAGTGGTAATATTAAAGAAGAACTTTATTTACAGTCACAAGAACTATCCGATAAAGCCAATGATTCGGTTAGTATCGTTCTTAACACCGTTGACGACGAAACGGTTGACAATGTAGTTAGTGAAGTAGCCAACGAGATCTTACCTTCGCAAGAAACAGATGACTCGATAATCGTGAAATCCGACCCCGATATCGAACTGGCCATTATCGATGAATCTTCCAATATTGATTATatacaatttttggaaaataaccAAGTGCTGTTAACATGTCGTACCTGTGCGAAAAGCTTTTCCACTGTGGAGGGTATGAAGTGCCACAAACGTGTACACACGGGAAGTCTTTTTAAATGTAGAGAATGTGGTAAGAAGTATACCAGACAAAATCATTTGCAGCGACATGAATTGTCACACAGTCGTCGAAAGGTTCACGTTTGCAAAATCTGTAACAAAACTTTGACACGATTTGAGCATCTTAAAAGGCATTTGGTAACTCATTTAAAAGATAAACCTTTCAGTTGCACAACGTGCAATCGTGGTTTTAATAGAGCAGAACATCTGGAAAACCATGTCAAAAGATGTAAAGGTATTCATGTTTACATTTGCGATATTTGTAACAAGGGATTTAATCGAGAAGACAGCCTGGAAGTACATAAACATATtcacaataataaattacctgTTTTACCTACACTCGaaaacataaacaatattgatgaacattatgttgaaattgagtgTGAAGGTATGCCCGAACTATCGGAATTATCTGATAGTGAAGCAGAAGCTGGTGACAGTTTTGAAACTGAAATTATTTCATCCGAGAATTGCGATGAAAATGCAACTGATGATACTACAATAATAGTAAATATTCAAGAGAGTGAAACTGCAGAAATATACGCGGAGGTAGAGTCTGCTGAATTAGAAGATGAAAGTAAAGAGTTAGATGAAGATTTTTATGAAGGAGAATTCAATTTAAAGGAAGAAAGAGAAGATTCTGATAGTGGACAATCGGAGTATTTACCAAAACCATCGCTGAAACGAAAACGCGGTCGTCCTCGTAAACACAGCATTTCTAAAGCAAATAAACCTCGTGGACGCTCGTCactttcaaaagtaaaaattgaGCCATCAGATGATATCGAAGGTGAATTTCCTTGTCCAGTTTGTAATGAAGTATTCAGCAGAATGAATTTGCTTGAAAAACATGCTTTGGAACATAACGGTTTGAAATTGCATTCATGTACCACATGCAACAAGAAATTTACGCGTACCAATCATTTAAAAAGACACATGTTGTCTCATTCTGAAGTAAAACCTTTTTCATGCGAAATTTGCTTTAAGTGTTTCAACAGACGTGATCATCTAACTCAGCATATGAAATTACATTATAGACTTGATGATCTTGAATGTGATATATGCAAAAAACCGTTTGGTCGTGAAGAACAACTGATTAAACACAAagctacaaaacataatatTGGTGATAAAGTTGCAGGTGAGAAGAAATTTCAATGTCCTGTGTGCCTTAAAGGTTTTACAACCGAAAAATATCGTGATATTCACATGAAAGGCCACAATGGTGAAAAAACATTTGAATGCAGAATTTGTCACAAGTCGTTCCTCTCTAAATCCCATTTATCGGAACATGTGAAGTTTCATAACGATCAATCCAAGAAATTTTTGTGTTCAGAATGTGGTCAGCGCTTCATAAGAAACGATTACTTGGTAATTCACATGCGAAGACATCGAGGTGAGAAAccatttaaatgtaaatattgtgGAAAGGGCTTCCCTCGGACCACTGATTTAACAGTTCACGAAAGGTATCACACTGGTGAAAAAACGCATTTGTGCACCATTTGCGGTCGTGGATTtggaagagCTTACAATTTAACTGTTCACATGAGAACTCATACTGGAGAGAAGCCTTATGCTTGTACTTATTGTGATGCAGCTTTTGCACAAGGCAATGATCTTAAGGCTCACGTACGTCGTCACACCGGAGAGAGATTTCAATGTGAACTTTGTACAGAAAGTTTTTTAATGGGCTATTTGTTAACTCAACATAAGCGAACTGTACATGgCTTGAATGTTGTAAGTAACATAAGAAGACTTCAACATATAAAAACTGATGTAACAAATATAGATGACCCTCCAATTACTATTCCATTACCTCCACCTGTTATTCCAGTAAATGCTATGAATGCTCAGTTGCAAGCTCAAATGGCAATACAACAGTTACAACAACAAATTAGTAGGCAGTGA
- Protein Sequence
- MESFEFDFHNICRLCKSTSESMRSLFETCDKNAACPRFDEMLMACTALSVNLGDNLPDQACQVCIDNLQISYNFKLQCENTDISLRDYIKSFKSSGNIKEELYLQSQELSDKANDSVSIVLNTVDDETVDNVVSEVANEILPSQETDDSIIVKSDPDIELAIIDESSNIDYIQFLENNQVLLTCRTCAKSFSTVEGMKCHKRVHTGSLFKCRECGKKYTRQNHLQRHELSHSRRKVHVCKICNKTLTRFEHLKRHLVTHLKDKPFSCTTCNRGFNRAEHLENHVKRCKGIHVYICDICNKGFNREDSLEVHKHIHNNKLPVLPTLENINNIDEHYVEIECEGMPELSELSDSEAEAGDSFETEIISSENCDENATDDTTIIVNIQESETAEIYAEVESAELEDESKELDEDFYEGEFNLKEEREDSDSGQSEYLPKPSLKRKRGRPRKHSISKANKPRGRSSLSKVKIEPSDDIEGEFPCPVCNEVFSRMNLLEKHALEHNGLKLHSCTTCNKKFTRTNHLKRHMLSHSEVKPFSCEICFKCFNRRDHLTQHMKLHYRLDDLECDICKKPFGREEQLIKHKATKHNIGDKVAGEKKFQCPVCLKGFTTEKYRDIHMKGHNGEKTFECRICHKSFLSKSHLSEHVKFHNDQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYACTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQHIKTDVTNIDDPPITIPLPPPVIPVNAMNAQLQAQMAIQQLQQQISRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00270134;
- 90% Identity
- iTF_01292080;
- 80% Identity
- -