Rful027015.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhagonycha fulva
Gene Symbol
-
Assembly
GCA_905340355.1
Location
HG996555.1:41765362-41774841[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.7 1.1e+02 4.4 2.8 2 23 183 204 182 204 0.94
2 16 2.2e-05 0.00064 20.9 4.5 1 23 209 231 209 231 0.98
3 16 0.00018 0.0052 18.0 5.1 1 23 237 259 237 259 0.97
4 16 0.00038 0.011 17.0 0.9 1 21 265 285 265 286 0.94
5 16 0.00011 0.0033 18.6 0.6 1 23 293 315 293 315 0.97
6 16 0.00094 0.027 15.8 0.1 1 23 478 500 478 500 0.95
7 16 0.00018 0.0052 18.0 7.3 1 23 506 528 506 528 0.96
8 16 0.0001 0.003 18.7 6.7 1 23 534 556 534 556 0.98
9 16 0.00042 0.012 16.8 0.2 2 23 563 585 562 585 0.95
10 16 0.36 10 7.6 1.0 1 23 597 619 597 619 0.87
11 16 0.018 0.53 11.7 5.6 1 23 625 647 625 647 0.97
12 16 7.3e-06 0.00021 22.4 0.5 1 23 654 676 654 676 0.96
13 16 9.4e-06 0.00027 22.0 1.2 1 23 682 704 682 704 0.98
14 16 1.4e-06 4e-05 24.7 0.9 3 23 712 732 710 732 0.96
15 16 0.00033 0.0095 17.2 0.1 1 23 738 760 738 760 0.98
16 16 0.19 5.5 8.5 0.7 1 23 765 788 765 788 0.97

Sequence Information

Coding Sequence
ATGGAAAGTTTTGAATTTGATTTTCATAATATATGTCGATTGTGCAAAAGCACATCGGAATCGATGCGATCTTTATTTGAAACTGATGATAAAAATGCAGCTTGTCCCCGCTTTGACGAGATGCTAATGGCCTGTACGGCAGTTTCGGTAAATCTAGGAGATAATTTGCCAGACCAGGCTTGTCATGTTTGCATTGAAAATTTACAAATTTCCTACAATTTCAAGCTACAATGCGAAAACACCGACATTTCTCTTCGCGATTATATCAAAAGTTTTAGGAGCAGTGGTAGTATTAAAGAAGAACTTTATTTACAATCACAAGAACTATCGGATAAAGCTAATGATTCGGTTAGTATCATTCTTAACACCGCCGATGATGAAACGGTTGACAATGTAGTTAGTGAAGTAGCCAACGAGATCTTACCTTCGCAAGAAACAGATGACTCGATAATTGTGAAATCCGACCCTGATACCGAACTGGCCATTATCGATGATTCTTCCAATATTGATTACATACAATTTTTGGAAAATAACCAAGTGCTGTTAACATGCCGTACCTGTGCGAAGAGCTTCTCCACTGTGGAGGGTATGAAGTGCCACAAACGTGTGCACACGGGAAGTCTTTTTAAATGTAGAGAATGTGGTAAGAAGTATACCAGACAAAATCACTTGCAGCGACATGAATTGTCACACAGTCGTCGAAAGGTTCACGTTTGCAAAATCTGTAACAAAACTTTGACTCGATTTGAGCATCTTAAACGGCATTTGATAACTCATTTAAAAGAGAAACCTTTCAGTTGCACAACGTGCAATCGTGGTTTTAATAGAGCTGAACATCTGGAAAACCATGTTAAAAGATGTAAAGGTATTCATGTTTACATTTGCGATATTTGTAACAAGGGATTCAATCGAGAAGATAGCCTGGAAGTACATAAACATATTCACAATAATAAATTACCTGTTTTACCTACACTCGAAAATATAAACAATATTGATGAACATTATGTTGAAATTGAGTGTGAAGGTATGCCCGAGTTATCGGAATTATCTGATAGCGAAGCAGATGCTGGTGACAATTTTGAACCCGAAATTCTTTCATCTGAGAATTGTGATGAAAATGCTCCTGATGATACTACATTGATAGTAAATATTCAGGACAGTGAAACTGCAGAAATATACGCGGAAGTCGAGTCTGCTGAATTAGAAGATGAAAGTAAAGAGTTAGATGAAGATTTTTACGAAGCAGATTTCAATTTAAAGGAAGAAAGAGAAGATTCTGATAGTGGACAATCGGAGTATTTACCAAAACCATCGCTGAAACGAAAACGCGGTCGTCCCCGTAAACACAGCATTTCCAAAACAAGTAAACCTCGTGGACGCTCTTCACTTTCAAAAGTAAAAATTGAGCCATCGGATGATATCGAAGGTGAATTTTCTTGTCCAGTTTGTAATGAAGTATTCAGCAAAATGAATTTGCTTGAAAAACATGCGTTGGAACATAACGGTTTGAAATTGCATGCATGTACCACATGCAACAAGAAATTTACGCGTACCAATCATTTAAAAAGACACATGTTGTCTCATTCTGAAGTAAAACCTTTTTCTTGCGAAATTTGCTTTAAGTGTTTCAACAGACGTGATCATTTATCTCAGCATATGAAATTGCATTATAGACTTGATGAACTTGAGTGTGATATATGCAAGAAACCGTTTGGTCGTGAAGAACAATTGATTAAACACAAAGCTACAAAACATAATATTGGTGATAAAGTTGCAGGTGAGAAGAAATTTCAATGTCCTGTGTGCCTTAAAGGTTTTACAACCGAAAAATATCGTGATTTTCACATGAGAGGCCACAATGGTGAGAAAACATTTGAATGCAGAATTTGTCACAAGTCGTTCCTCTCTAAATCACATTTATCTGAACATGTGAAGTTTCATAACGATCAATCCAAAAAATTTTTGTGTTCAGAATGTGGTCAGCGCTTCATAAGAAACGATTACTTAGTAATTCACATGCGAAGACATCGAGGTGAGAAACCTTTTAAATGTAAATATTGTGGAAAGGGTTTCCCTCGGACCACTGATTTAACAGTTCACGAAAGATATCACACTGGTGAAAAAACGCATTTGTGCACCATTTGCGGTCGTGGATTTGGAAGAGCTTATAATTTAACTGTTCACATGAGAACTCATACTGGAGAGAAGCCCTATGCGTGCACTTACTGTGATGCAGCTTTTGCACAAGGCAATGATCTTAAGGCTCATGTACGTCGTCACACCGGAGAGAGATTTCAATGTGAACTTTGCACAGAAAGTTTTTTAATGGGCTATTTGTTAACTCAACATAAACGAACTGTACATGGATTGAATGTTGTAAGTAACATAAGAAGACTTCAACATATAAAAACTGATGTAACAAATATAGATGACCCTCCAATTACTATTCCATTACCTCCACCGGTTATTCCAGTAAATGCTATGAATGCTCAGTTGCAAGCTCAAATGGCAATACAACAGATACAACAACAAATTAGTAGGCAGTGA
Protein Sequence
MESFEFDFHNICRLCKSTSESMRSLFETDDKNAACPRFDEMLMACTAVSVNLGDNLPDQACHVCIENLQISYNFKLQCENTDISLRDYIKSFRSSGSIKEELYLQSQELSDKANDSVSIILNTADDETVDNVVSEVANEILPSQETDDSIIVKSDPDTELAIIDDSSNIDYIQFLENNQVLLTCRTCAKSFSTVEGMKCHKRVHTGSLFKCRECGKKYTRQNHLQRHELSHSRRKVHVCKICNKTLTRFEHLKRHLITHLKEKPFSCTTCNRGFNRAEHLENHVKRCKGIHVYICDICNKGFNREDSLEVHKHIHNNKLPVLPTLENINNIDEHYVEIECEGMPELSELSDSEADAGDNFEPEILSSENCDENAPDDTTLIVNIQDSETAEIYAEVESAELEDESKELDEDFYEADFNLKEEREDSDSGQSEYLPKPSLKRKRGRPRKHSISKTSKPRGRSSLSKVKIEPSDDIEGEFSCPVCNEVFSKMNLLEKHALEHNGLKLHACTTCNKKFTRTNHLKRHMLSHSEVKPFSCEICFKCFNRRDHLSQHMKLHYRLDELECDICKKPFGREEQLIKHKATKHNIGDKVAGEKKFQCPVCLKGFTTEKYRDFHMRGHNGEKTFECRICHKSFLSKSHLSEHVKFHNDQSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYACTYCDAAFAQGNDLKAHVRRHTGERFQCELCTESFLMGYLLTQHKRTVHGLNVVSNIRRLQHIKTDVTNIDDPPITIPLPPPVIPVNAMNAQLQAQMAIQQIQQQISRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00270134;
90% Identity
iTF_01294086;
80% Identity
-